KEGG   Vibrio natriegens: PN96_02685
Entry
PN96_02685        CDS       T04636                                 
Name
(GenBank) RNA polymerase sigma 70
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vna  Vibrio natriegens
Pathway
vna02020  Two-component system
vna02040  Flagellar assembly
vna05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vna00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PN96_02685
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    PN96_02685
  09142 Cell motility
   02040 Flagellar assembly
    PN96_02685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vna03021]
    PN96_02685
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vna02035]
    PN96_02685
Transcription machinery [BR:vna03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PN96_02685
Bacterial motility proteins [BR:vna02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    PN96_02685
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 UPF0122 HTH_23 GerE HTH_10 MarR_2 Phage_terminase Rv2175c_wHTH UPF0175 MarR
Other DBs
NCBI-ProteinID: ALR14940
Position
1:569825..570559
AA seq 244 aa
MNNAVTYDQRGKVNSQQAFIERYSVLVKRIAHHLLGRLPPSVQVEDLIQAGMIGLIEAQQ
NYDGTKGASFETYAGIRIRGAMLDDMRKGDWVPRSVHKNNREINQAIAELEGILNRDPTD
SEVAAHLEMTLDQYHSALTDINCSKLVGIEDLGVSDDVISPSDESDNSNPFKDVADESFR
KALIESIKQLPEREALVLSLYYDEELNLKEIGDVLGVSESRVSQILSQSMQRLRTKLSAW
TQNN
NT seq 735 nt   +upstreamnt  +downstreamnt
gtgaataatgcagtaacctacgatcaacgcgggaaagtaaacagtcaacaggcgttcata
gagcgttattctgtgttggttaagcgtattgctcatcaccttttaggccgcttaccgccg
agtgttcaggtagaggatttaatccaggccggcatgatcggccttatcgaagctcagcag
aattatgacggcacgaaaggtgcgagctttgaaacctatgctggtatccgtattcgcggc
gccatgttagacgacatgcgcaaaggggattgggttccgcgttcggttcataaaaacaat
cgtgaaattaatcaagctattgcagagctcgaaggcattctcaaccgtgacccgacagac
tctgaagtggcggcacatctcgaaatgactttggatcaatatcatagtgcactaactgat
ataaactgctcaaagttagtcggtattgaggatttaggcgtttcagatgatgtcatttct
ccgtcagatgaaagtgataacagcaacccatttaaagatgtggctgacgaatcttttcgt
aaagcactgattgaatcaataaaacagcttccagagcgtgaagcattggtactttcgctt
tattatgacgaagaacttaacttaaaagaaattggcgatgttttgggcgtaagcgaatct
cgcgtaagtcaaattctgagtcaatcgatgcaacgtttacgcaccaagctgagtgcgtgg
acacaaaataattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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