KEGG   Candidatus Vesicomyosocius okutanii: COSY_0301
Entry
COSY_0301         CDS       T00530                                 
Symbol
uvrD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
vok  Candidatus Vesicomyosocius okutanii
Pathway
vok03420  Nucleotide excision repair
vok03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vok00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    COSY_0301 (uvrD)
   03430 Mismatch repair
    COSY_0301 (uvrD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vok03400]
    COSY_0301 (uvrD)
Enzymes [BR:vok01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     COSY_0301 (uvrD)
DNA repair and recombination proteins [BR:vok03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     COSY_0301 (uvrD)
   MMR (mismatch excision repair)
    Other MMR factors
     COSY_0301 (uvrD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor Viral_helicase1 AAA_11 AAA_30 AAA_12 DEAD DUF4852 Catalase-rel Orthopox_F7
Other DBs
NCBI-ProteinID: BAF61428
UniProt: A5CX79
Position
complement(302807..304960)
AA seq 717 aa
MNLSEITNGLNDKQCQSVTLNNEKNALILAGAGSGKTKVLIHRIAYLITQKDIHIDAILA
VTFTNKAATEMCERLSKLLRHPITSMWTGTFHSLAHRLLRTHYEQAQLTYNFQILDAQDQ
FRIIKNLMKENNIDESKFPIKKVQQFINNQKNKGIHLHDIDSSYNYFIKKSLKVFELYEV
HCKTNELIDFAELLIRSYELLKNNVNLLNHYKNRFKHILIDEFQDTNMIQYKWIKLLFSG
NNKVFCVGDDDQSIYGWRGANIENITKLCTDFVPIKTIRLEQNYRSTNNILTASNALIAH
NTSRMGKSLWTNAIDGELIDMYEAQTEIDEADYVVSSIQKLITNGVLPNDCAILYRLNTQ
SRIFEEVLIKYNIPYIIYGGLKFFERAEIKHALSYLRLIENSDDNLAFERVVNFPTRGIG
NTTINKIRIFAQNNHVSLFQATIQVSSTLSTRTTNALNGFTNLIEKMKDDTKNLNLSEKI
VNLLNMSGLMAHYSNDKTSNKKENLEELITAAKQYKQNNDMNEIIGFISLASIDSGGNTN
TLTNQNVQLMTMHSAKGLEFPYVFLSGMEEGLSPYRQSKNKPHLIDEERRLCYVGMTRAM
KKLSLSYTMKRFLHGHFLYADPSRFLNEIPDEYLNKIKVKFDITIKNYNNNNIFNQSITP
KSDNQLHIGALVNHPKFGLGTVLNFEGQGDSSRIQIKFKQAGSIKWLISSYANLEFI
NT seq 2154 nt   +upstreamnt  +downstreamnt
atgaatttatctgaaataacaaatggtctaaatgacaaacaatgccaatcagttacacta
aataatgaaaaaaacgctttaatactagcaggtgctggaagtggtaaaaccaaagttctc
atacatagaattgcctacttaatcacacaaaaagatattcacattgatgctattctagcc
gttacttttaccaataaagccgctactgaaatgtgtgaaagattaagtaagctattaagg
catcctattacaagtatgtggactggaacatttcatagtttggcacaccgattattacgc
actcattatgaacaagctcaattaacttataactttcaaatcctagatgcacaagaccaa
ttccgcattatcaaaaacctaatgaaagaaaataatatagatgaatctaagtttcctatt
aaaaaggttcagcagtttattaacaatcaaaaaaataaaggtattcacttacatgatatt
gactctagttacaactattttattaaaaaaagtcttaaagtatttgagctttatgaagta
cactgcaaaacaaatgaattgattgattttgcagaactgttgatacgtagttatgagtta
ttaaaaaataacgtaaacttacttaaccattataaaaatcgctttaagcacattttaatt
gatgaatttcaagacactaatatgatccaatacaaatggattaaattattatttagtggc
aataataaagtattctgtgtgggcgatgatgaccaatctatttatggctggcgcggtgca
aatattgagaatattactaaattatgcacagattttgttcccattaaaaccatccgttta
gaacaaaattatcgttcaacaaataatattctaacagcttctaacgccttgattgctcat
aataccagtcgcatgggtaaatctctttggactaatgctatcgatggtgaattaattgat
atgtatgaggcgcaaactgaaatagacgaagcagactatgtcgtcagtagtattcagaaa
ttaatcactaatggcgtattacccaatgattgtgctattctgtatcgccttaatacccaa
tctcgtatctttgaagaggttctcataaaatacaatattccttatattatttatggtggt
ttaaaattttttgaacgtgctgaaattaaacacgctttaagttatttacgtttgatagaa
aactcagatgataatcttgcctttgaacgtgtggttaattttccaactcgtggtattgga
aatacaacaattaacaaaatacgtatatttgcacaaaataaccatgtcagtctttttcaa
gcaaccatacaagtatcatctacactgtcaactcgtactactaatgcattaaatggattt
accaacctaattgagaaaatgaaagatgatacaaaaaacttaaatttatctgaaaaaata
gtaaacttacttaatatgtcaggattaatggcgcattattctaatgataaaactagcaac
aaaaaagaaaatctagaagaattaataactgcggctaaacaatataaacagaacaatgat
atgaatgaaataataggatttatttctttagcatcaatagattctgggggtaatactaat
acacttactaatcaaaatgtacaacttatgactatgcattcagccaaagggttagaattt
ccttatgtattcttaagcggcatggaagaaggtttatccccctacaggcaaagcaaaaat
aaaccacatttaatagatgaagaaagacgattatgctacgttggcatgacccgtgccatg
aaaaaactgtcactatcttacaccatgaaacgatttttacacggacattttttgtacgct
gatccttcacgtttcctaaatgagattccagatgaatatttaaataaaattaaagttaaa
tttgatataacaataaaaaattacaataataataatatttttaatcaaagcattacacct
aaatctgataatcaattacatattggtgctttagtcaaccaccctaaattcggattagga
acagtattaaattttgaaggacaaggggatagttctagaatacagataaaatttaaacaa
gcaggcagtataaaatggttgattagttcttatgcaaatttagaatttatatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (58)   

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