KEGG   Vibrio parahaemolyticus RIMD 2210633: VP0871
Entry
VP0871            CDS       T00120                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
vpa  Vibrio parahaemolyticus RIMD 2210633
Brite
KEGG Orthology (KO) [BR:vpa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vpa03016]
    VP0871
Enzymes [BR:vpa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     VP0871
Transfer RNA biogenesis [BR:vpa03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    VP0871
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNAseD_HRDC_C HRDC
Other DBs
NCBI-ProteinID: BAC59134
UniProt: Q87RC6
Position
1:904382..905548
AA seq 388 aa
MIECQRFAGIFYSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLI
QLFDGKHLSLIDPTELTDMTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQ
LMAAFLGHGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYE
KLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQLKPSELAVLKPLATWR
YREAIKRDLALNFIFKEGDLLTVARLGLTSFKKMEAEGMDSRAVNRHGTKIAAIVKKAKQ
TPPEEYPAKIDRLMDYPGYKQVFKNMKDVVKSAAQKSGLATEFLASKKQINQLISWVWKK
DRDPARLPDVMQGWRLELLGEKMNKALK
NT seq 1167 nt   +upstreamnt  +downstreamnt
atgatagaatgccagcgttttgctggcattttttatagcgagaagcatgtgaattatcag
attattactaaaaacaaagacctagaacaagtttgtgctcaagcaagagacgcagatgtc
gtaatgctggataccgagttcgtacgtatcaggactttttatccgcaactaggtttgatt
cagcttttcgacggcaagcacttgtcccttatcgatccgacagaattaacggacatgaca
tctttcatcgaactattgaaagatgcatcggtacttaaagtgcttcacgcctgtggcgaa
gatttagaagtattccaaaatgcatttggttgtacgccatttccaatggtcgatacacag
ttaatggcggcgtttcttggccacgggctgtcaacaggttttgcaacgctggtggaagaa
tacttaggtgttgcgttggacaagagtgaatctcgcaccgactggatggctcgccctctc
acgcaaaagcaacttgattatgcagcggcagacgttcactacttgttgccactttacgaa
aaattgctcgataaagtcactgaagctggttggtgggaagcggtgcagcaagagagcgac
ttgttggtttccaaacgcattcgcgaaaccaacgaagaaaatgcgtaccttgatattaaa
ggagcgtggcaacttaaaccgtcagagttagctgtgttaaagccgctagcgacttggcgt
tatcgtgaagcaatcaagcgcgacttagcactaaacttcatcttcaaagagggtgatttg
ctaacggttgctcgtttaggtttaacaagctttaaaaagatggaagcggaagggatggat
agccgcgcggtcaatcgtcacggtactaaaattgcggccatcgtgaaaaaggctaagcaa
acgccaccagaagaatacccagctaaaattgatcgcctgatggattaccctggctataag
caggttttcaaaaacatgaaagatgtcgtgaaaagtgctgcgcaaaaatcagggttagcg
accgagtttttagcatcgaaaaagcagattaaccagctcatcagttgggtgtggaagaag
gatcgtgaccctgcgcgcttgcctgatgttatgcaaggttggcgtctagagttattgggc
gaaaaaatgaataaggcgttgaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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