KEGG   Variovorax paradoxus B4: VAPA_1c03920
Entry
VAPA_1c03920      CDS       T02835                                 
Name
(GenBank) putative methylcrotonoyl-CoA carboxylase, subunit alpha
  KO
K13777  geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd00907  Pinene, camphor and geraniol degradation
vpd01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09100 Metabolism
  09109 Metabolism of terpenoids and polyketides
   00907 Pinene, camphor and geraniol degradation
    VAPA_1c03920
Enzymes [BR:vpd01000]
 6. Ligases
  6.4  Forming carbon-carbon bonds
   6.4.1  Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
    6.4.1.5  geranoyl-CoA carboxylase
     VAPA_1c03920
SSDB
Motif
Pfam: CPSase_L_D2 Biotin_carb_N Biotin_carb_C Biotin_lipoyl Biotin_lipoyl_2 Dala_Dala_lig_C HlyD_3 ATP-grasp RnfC_N LpxI_N NQRA
Other DBs
NCBI-ProteinID: AGU47522
UniProt: T1X3N5
Position
1:complement(417820..419832)
AA seq 670 aa
MSAAPGRPKQARAAARSAEASRCFHKILVANRGEIAVRVMRTARALGYRTVAVYSSADAD
AEHVRQADQAVWIGEPLPAQSYLNIVAIVEAARSSGAEAVHPGYGFLAENAEFAQACRDA
RLVFIGPSPEAIRAMGDKAGAKRLMQAAGVPCIPGYQGEDQSAATLAAEAARIGWPVMIK
ATAGGGGRGMRLAPSADAFAELLQSAQSEALHAFGDATVILERAIAAPRHIEIQVFADRH
GNAIHLGERDCSVQRRHQKLIEETPSPAVSGALRERMGATAVAAAEAIGYEGAGTLEFLL
DAKGEYWFMEMNTRLQVEHPVTEAVTGLDLVELQLRIAAGEPLPLAQQDVRMSGHAIEVR
LCAEVPQQGFVPQSGTLAAWRPSAALRIEHALRDGAAVPPFYDSMIAKLVAHGRTREEAR
RRLIAGLQDTVALGLATNQRFLQRALSHPAFAGGSATTAFIAEHAEALLAPDPAMERRAA
WLAALLLQLGERGWPSPLAHTLPNALRFSLDGMVHAARVTPQGAGRFDVALDAAAPARIE
LLSLAGDGALCFSCDGVSEQAMAVRESAVRQWIHFRGQAFEFQDLTHVAVPRTGAAGGDG
LLRASMNGRVVALLVAEGDAVAAGQPIATLEAMKMEHVHCAPRAGRVAALHVTVGAQVAA
RHVVAEIADA
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgagcgcagcgccgggccgccccaagcaagctcgcgccgcagcgcgaagcgcggaggct
tcccgatgtttccacaagatcctcgtcgccaaccgcggcgagatcgcggtgcgcgtgatg
cgcaccgcgcgcgccttgggctatcgcacggtggccgtgtattcgagcgccgacgccgat
gcggagcatgtgcggcaggccgaccaggccgtgtggatcggcgagccgctgcctgcgcaa
agctatctgaacatcgtcgccatcgtcgaagccgcgcgttcgagcggcgccgaagcggtc
catccgggctacggcttcctggcagagaacgccgagttcgcgcaggcctgccgcgatgcg
aggctggtcttcatcggcccttcgcctgaagccattcgcgccatgggcgacaaggcgggc
gcgaagcggctgatgcaggcggccggcgtgccctgcattcccggctaccagggtgaagac
cagagcgcggccacgctcgctgccgaagccgcgcgcatcggctggcccgtgatgatcaag
gcgaccgccggcggcggcgggcgcggcatgcggctcgcgccttcggccgatgcctttgcc
gaactgctgcagagcgcgcagtccgaggcgctccatgccttcggcgacgcgacggtgatc
ctggagcgcgccatcgccgcgccgcgccacatcgagatccaggtgttcgccgaccggcac
ggcaacgccatccaccttggcgagcgcgactgctcggtgcagcgccggcatcagaagctg
atcgaggaaacgccctcccccgccgtctccggggcattgcgcgagcgcatgggcgcgacg
gcggtggcggcggccgaggccatcggctacgaaggcgcgggcacgctcgaattcctgctc
gatgcgaagggagagtactggttcatggaaatgaacacccggctgcaggtggagcatccg
gtgaccgaagccgtgacgggactcgacctggtcgagctgcagctgcgcattgcggcgggc
gagccgctgcctcttgcacagcaggacgtgcgcatgagcggccatgccatcgaagtgcgg
ctgtgtgcagaagttccgcagcagggcttcgtgccgcaaagcggcacgctggccgcgtgg
cgcccctcggccgccctgcgcatcgaacacgcgctgcgagacggcgccgcggtgccgccc
ttctacgattcgatgatcgccaagctggtggcccacggccgcacgcgcgaagaagcgaga
cgccggctgatcgcggggctgcaggacacggtggcattgggccttgcgaccaaccagcgc
ttccttcagcgcgcgctgtcgcatccggcgtttgccggcggttcggccacgacggcgttc
attgccgaacacgccgaggcattgcttgcgcccgatcccgccatggagcgccgcgccgca
tggctggcggcgctgctgctgcagctgggcgaacgcggatggccctcgccgctcgcgcat
acgctgcccaacgccttgcgcttttcgctcgacggcatggtgcatgcggcgcgcgtgacg
ccgcagggtgcgggccgtttcgatgtcgccctcgatgcagcggcaccggcccggatcgaa
cttctttcgctggccggcgatggcgccttgtgcttctcgtgcgatggcgtctcggagcag
gccatggcggtgcgcgaatccgccgttcgccagtggatccatttccgcggccaggccttc
gaattccaggacctcacgcatgtcgcggtgccgcgcaccggcgccgcgggtggcgacggc
ctgctgcgcgcctcgatgaacggccgcgtcgtcgcgctgctcgtggcggaaggcgacgcc
gtcgccgccggccagccgatcgccacgctcgaggcgatgaagatggaacatgtgcactgt
gcaccgcgcgccggccgtgtcgccgcgttgcatgtgacggtgggcgcgcaggtggccgcg
cgccatgtggtggccgagattgccgacgcatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (28)   

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