KEGG T02835: VAPA

Variovorax paradoxus B4: VAPA_1c06080

Entry

VAPA_1c06080 CDS T02835

Definition

(GenBank) type VI secretion system protein, Vgr family

K11904

type VI secretion system secreted protein VgrG

Organism

vpd Variovorax paradoxus B4

Pathway

vpd03070

Bacterial secretion system

Brite

KEGG Orthology (KO) [BR:vpd00001]
09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VAPA_1c06080
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpd02044]
    VAPA_1c06080
Secretion system [BR:vpd02044]
Type VI secretion system
  Imp/Vas secretion system core components
   VAPA_1c06080

SSDB

Motif

Pfam:

Phage_GPD Phage_base_V

Other DBs

NCBI-ProteinID:

AGU47738

UniProt:

T1X573

Position

1:670146..673043

AA seq 965 aa
MADHEFRIETDSPAKDDLMFWRIVGHEALARPSAYELTVLSKNKALDAKDILGRAFDVVI
QFQDKDGGMHERHCQGHAVRFVRAGHVGRHFEYRITLRSWFWLLTKRTNSRILQDKKVLE
VLDAVFEDSPIKRFKKTKAGNVIGTHTPRRYCVQHQENDYQFLSRLLEDEGIYYWFDSHD
APGTMHLSDASDLAHDKLPVEGTLRYAASDASEARYNEISRWVSSRQFDTGKQASRDSDF
KAIKKKLGAVIDAKDDHELADFEEFEFPGGYFTGEDGDNRTKLRGDELNARRDRHWALTT
WPDVTAGRSFKFEGDPDGTRDGDYVIAACTFMASHPGYESVGAGTAVPQDLRTALAGVLR
DDAVNADTLQVLEDLIASTPMLSTSQPGTSAFLITAIPMERAYRPPRLTPRVTMPGPQTA
IVVGPAGDELHVDDHGRVKVHFHWDRYDESNEKSTCWVRVSQPWGGKGWGGYFIPRIGQE
VIVDFLNGDPDRPIIVGRVYNDDQPIPYKSPTQSGFKTRSTPGGGPANYNEIMFEDKKGE
ENINIHAELDMSRSVERDDSTTVDRDQSVTVKRDQTLHVDRDRKSTVTRNETTMVVVDQK
NTVKGNQNNQVVGNRDTFIDSNDMLKVTGTGTHEVVGARSDISRAGETRTVTGDQTINVS
GNVTYKAAKMSFEAGHIDWMVTGSSSKYITVPTGPLALMANKIKLMSNTGIELMAVGSID
QTSVGSNTTVLGPNTSGYIGNNSEANLGITSSTFMGLSIENAVSLAMSNFIGVSIENALA
VKLINCAAPEIKAISTADVNLTPLKVISPGGAGGPAYAAAVAGVIGLVAGVGTGIKGIGD
TLTQYEQAAGKLEDAAAEAEQADLPGLAGRLSQLARITRDRRSQGAAAAYTGAAGAFIPI
TLPLTLAMGALGAAAAATDDHGAEALGERSPTNADGTSTSSYRERGTPWTPPTGSGSGGG
SGSGS

NT seq 2898 nt +upstreamnt +downstreamnt
atggccgatcacgagttccgcatagagacagattcacccgccaaggacgacctgatgttc
tggcgcatcgtgggccacgaggcgctggcgcgcccgtcggcctacgagctcacggtgctg
tcgaagaacaaggcgctcgatgccaaggacattctcggccgtgccttcgacgtggtcatc
cagttccaggacaaggacggcggcatgcacgagcgccactgccagggccacgcggtgcgc
ttcgtgcgcgcggggcatgtgggccggcacttcgaataccgcatcacgctgcgctcctgg
ttctggctgctcaccaagcgcaccaactcgcgcatcctgcaggacaagaaggtgctcgaa
gtgctcgatgcggtgttcgaagacagcccgatcaagcgcttcaagaagaccaaggccggc
aacgtcatcggcacccatacgccccggcgctactgcgtgcagcatcaggagaacgactac
cagtttctctcgcgcctgctcgaggacgaaggcatctactactggttcgattcgcacgat
gcgcccggcaccatgcacctgtcggacgccagcgacctggcgcacgacaagctgccggtg
gaaggcacgctgcgctatgcggccagcgatgcgagcgaggcgcgctacaacgagatctcg
cgctgggtgagttcgcgccagttcgacaccggcaagcaggcctcgcgcgacagcgacttc
aaggcgatcaagaagaagctgggtgccgtcatcgatgcgaaggacgaccacgagctggcc
gacttcgaggagttcgagtttcccggcggctacttcaccggagaggatggagacaatcgc
accaagctgcgcggcgacgagctcaacgcccgccgcgaccgccactgggcgctgaccacc
tggcccgacgtgacggccgggcgcagcttcaagttcgagggcgatcccgacggcacgcgc
gacggcgactacgtcatcgcggcctgcaccttcatggccagccaccccggctatgaaagc
gtgggcgccggcacagccgttccgcaggacctgcgcacggcgttggccggcgtgctgcgc
gacgatgcggtgaacgccgacacgctgcaggttctggaagacctgatcgccagcacgccg
atgctcagcacctcgcagccgggcaccagcgccttcctgatcaccgcgatcccgatggag
cgcgcctatcgtccgccgcgcctcacgccgcgcgtgaccatgcccgggccgcagacggcc
atcgtggtcggccccgcgggcgacgagctgcacgtggacgaccatggccgcgtcaaggtg
cacttccactgggaccgctacgacgagagcaacgagaagtcgacctgctgggtgcgcgtg
tcgcagccctggggcggcaagggctggggcgggtatttcattccacgcatcggccaggag
gtgatcgtcgacttcctgaacggcgaccctgaccgcccgatcatcgtgggccgcgtctac
aacgacgatcagcccattccctacaagtcgcccacgcagagcggcttcaagacccgctcc
acgccaggcggtggtcccgcgaactacaacgagatcatgttcgaggacaagaagggggag
gagaacatcaacatccacgccgagctggacatgagccgcagtgtggagcgcgacgactcg
acgacggtggacagggatcagtcggtgaccgtcaagcgcgaccagaccctgcacgtcgac
cgcgaccgcaagagcacggtgacgcgcaacgagaccaccatggtggtggtggaccagaag
aacacggtcaagggcaaccagaacaaccaggtggtgggcaaccgcgacaccttcatcgac
agcaacgacatgctgaaggtgacgggcaccggcacccacgaggtggtcggcgcgcgcagc
gatatctcgcgcgccggcgagacgcgcaccgtgaccggcgaccagacgatcaacgtgagc
ggcaacgtgacctacaaggccgcgaagatgagcttcgaggccggccacatcgactggatg
gttaccggctccagctccaagtacatcaccgtgcccaccggcccgctggccctgatggcc
aacaagatcaagctgatgagcaacaccggcatcgagttgatggcggtggggagcatcgac
cagacgtccgtgggctccaacaccaccgttctcgggcccaataccagcggctacatcggc
aacaactccgaggcgaacctgggcatcacgagctccaccttcatggggctgagcatcgag
aacgcggtgtcgttggcgatgagcaacttcatcggcgtgtcgatcgagaacgcgctggcc
gtcaagctcatcaactgcgcggcaccggagatcaaggccatctccaccgccgacgtgaac
ctgacgccgctgaaggtcatcagcccgggcggcgccggcggacccgcctatgccgccgcg
gtggctggcgtcataggcctggtagccggcgtaggcaccgggatcaagggcatcggcgac
acgctgacgcagtatgagcaggcggccggcaagctggaggacgctgcagccgaggcggaa
caggcggacttgccggggctggcaggccggctctcgcagctggcgaggatcacgcgcgac
aggcgctcgcagggcgcggcggcggcgtacacaggtgcggccggggcgttcattccgatc
accttgccgttgacactggccatgggcgcgctgggagcggccgccgccgccaccgacgac
cacggtgccgaagcgctgggcgagagaagccccaccaacgcggacggaacgagtaccagc
agctaccgcgagaggggaacgccctggacaccgcccaccggttcgggctccggtggtggc
tccggcagcggttcgtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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