KEGG   Variovorax paradoxus B4: VAPA_1c09350
Entry
VAPA_1c09350      CDS       T02835                                 
Name
(GenBank) RNA-binding S4 domain-containing protein
  KO
K06182  23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
Organism
vpd  Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vpd03009]
    VAPA_1c09350
Enzymes [BR:vpd01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.21  23S rRNA pseudouridine2604 synthase
     VAPA_1c09350
Ribosome biogenesis [BR:vpd03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    VAPA_1c09350
SSDB
Motif
Pfam: S4 PseudoU_synth_2
Other DBs
NCBI-ProteinID: AGU48055
UniProt: T1X7D2
Position
1:complement(1032217..1032927)
AA seq 236 aa
MSGASEEGIRLAKRVAALAGCSRREAELLIENGAVRVDGVPALLPQSRVHDHQKVEIEAG
AKPEPVVPVTLLLHKPAGMATDTAHRLLVAANHHEPERAGVRFLPAHAKAQRCMTPLETG
ASGLVVYTQEWRIERKLQEDAGVLEHEVMVDVAGKVSPEQLVRFERSPARVSIGRQADDQ
TGLRFALKGARPGQIAHLCDEAGLRILAMRRIRIGRVPLAGLEPGQWRYLSPHERF
NT seq 711 nt   +upstreamnt  +downstreamnt
atgagcggcgcttccgaagagggcatccgccttgccaagcgcgtggctgcactcgcgggc
tgctcacggcgcgaggccgagctgctgatcgagaacggcgcggtgcgcgtcgacggcgtg
ccggcgctgctgccgcagtcgcgcgtgcacgaccaccagaaggtcgagatcgaggccggc
gccaagcccgagccggtggtgcccgtcaccctgctgctgcacaagccggcgggcatggcg
accgacaccgcgcaccggctgctggtggccgccaatcaccacgagcccgagcgcgcaggc
gtgcgcttcctgccggcgcacgccaaggcgcagcgctgcatgacgccactggaaaccggc
gccagcgggctcgtggtctacacgcaggaatggcgcatcgagcgcaagctgcaagaggat
gcgggcgtgctcgagcacgaggtgatggtcgacgtggccggcaaggtcagccccgagcag
ctcgtgcgcttcgagcgttcgcctgcgcgcgtgagcatcggccgccaggccgacgaccag
accggcctgcgctttgcactcaagggtgcgcggcccggacagatcgcacacctgtgcgac
gaagccggcctgcgcatcctggccatgcggcgcatccgcatcggccgcgtgccgctggcc
gggctggagcccggacagtggcgctatctttcgccgcacgagcgcttttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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