KEGG   Variovorax paradoxus B4: VAPA_1c09740
Entry
VAPA_1c09740      CDS       T02835                                 
Symbol
ddl
Name
(GenBank) D-alanine--D-alanine ligase Ddl
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd00470  D-Amino acid metabolism
vpd00550  Peptidoglycan biosynthesis
vpd01100  Metabolic pathways
vpd01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    VAPA_1c09740 (ddl)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    VAPA_1c09740 (ddl)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    VAPA_1c09740 (ddl)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:vpd01011]
    VAPA_1c09740 (ddl)
Enzymes [BR:vpd01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     VAPA_1c09740 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:vpd01011]
 Precursor biosynthesis
  Amino acid ligase
   VAPA_1c09740 (ddl)
SSDB
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp_3 ATP-grasp_4 ATPgrasp_ST GARS_A ATP-grasp CPSase_L_D2 TTL
Other DBs
NCBI-ProteinID: AGU48094
UniProt: T1X717
Position
1:1076108..1077079
AA seq 323 aa
MSLQDPKQFGKVAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRRE
GFARCFIALHGRHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPK
YVRLAFDQQSREQIRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVALSAKYDAD
VLCEEFIEGEEVTCAVLGSGLDAHALPVVRIAAPEGAYDYQNKYFTDDVKYHCPSGLPEA
EEHEIQRITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAG
IAYEDLCLRVLASASLDAAGGAQ
NT seq 972 nt   +upstreamnt  +downstreamnt
gtgagccttcaggatccaaagcaattcggcaaggttgccgtgctgttcggcggaagctcc
gccgagcgcgaaatctcgctgctgtccggcaacggcgtgctcgaggcgctgcgctcgcgc
ggcgtcgatgcgcatgccttcgatcccgccgagcgcgacctggtcgagttgcggcgcgag
gggttcgcgcgctgcttcatcgcgctgcacggccggcatggcgaggacggcacggtgcag
ggcgcgctcgaactgctcggcattccctacaccggctcgggcgtgatggcttcgagcgtg
gccatggacaaggtcatgaccaagcgcatctggcaggccgatggactgccgacgcccaag
tacgtgcgcctggctttcgaccagcaaagccgcgagcagatccgcgccgtgcccgacgtg
ctcggcttgccgctgatcgtgaagccgccgcgcgagggctcgtcgatcggcgtgaccaag
gtcgagggctattcgcagatgcaggacgcggtggcgctttcggcgaagtacgacgccgac
gtgctgtgcgaggaattcatcgaaggcgaggaagtgacctgcgccgtgctcggcagcggc
ctcgacgcgcatgcgctgccggtggtgcgcattgccgcacccgaaggcgcctacgactac
cagaacaagtacttcaccgacgacgtgaagtaccactgcccgagcggcctgcccgaagcc
gaggagcacgagatccagcgcatcacgctggccgcgtaccacacgctcggctgccgcggc
tggggccgcgccgacgtgatgatccgcgcgagcgaccgcaagcctttcctgctcgagatg
aacacttcgcccggcatgaccagccattcgctggtgcccatgtcggcgcgcgcggcgggc
attgcctacgaagacctgtgcctgcgcgtgctggcctcggcttcgctggatgccgcgggg
ggagcgcaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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