KEGG   Variovorax paradoxus B4: VAPA_1c14710
Entry
VAPA_1c14710      CDS       T02835                                 
Name
(GenBank) putative ribonuclease E/G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VAPA_1c14710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpd03019]
    VAPA_1c14710
   03009 Ribosome biogenesis [BR:vpd03009]
    VAPA_1c14710
Enzymes [BR:vpd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     VAPA_1c14710
Messenger RNA biogenesis [BR:vpd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     VAPA_1c14710
Ribosome biogenesis [BR:vpd03009]
 Prokaryotic type
  rRNA processing factors
   VAPA_1c14710
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP dnstrm_HI1420
Other DBs
NCBI-ProteinID: AGU48583
UniProt: T1X7S7
Position
1:complement(1607219..1610434)
AA seq 1071 aa
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSANQARIQDVIKEGQELVVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESR
LRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEECLKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPN
YKLERLKHDDPRLDHIEASYKMADEIEDPTSVTRRSQEPTNKQTPVIKGVLPDAPAPVVP
PKPEAVRAPAAVAPAPVAPPVASAPAPAETGFFARIKSWFGGTPAPAPAPAVIPIEPPKP
ARRDGGRPGRDGEARGARDGEQRRGGRGGEGRGENGSRSGGRDGERRGGRGGERREGRSS
EIRSEAAQPREQREQREPREVREPREPREARGPREGEQRRGGRGERREGEGREARPAPAE
LIDGSLEAQQLVSGAPAGDEGNAPAERAPRARGERRERGERGERAERGERSEPRNGTDAP
REASGGDNVAAQDGAQAERAPRGGREERAPRGDRNDGRRERRSEGQPRFSNGEAPANLDE
ADIRITESAEMAPANEGETGTGEQQAPRREGEERRGRSRDRYGRDRRERGPRDDGEASVA
GASADNAEASETPARQQPLATAERAAVPEEEAREPAPRSYFDRPAAAAPATPAATVAAVA
VAPVAAESSSKPAAAADGRALPKVQHFELPLSELAQIAENSGLQWVNSDAERIAQARAAI
AAEPKPVHVPRERPPAIVLDDGPLVLVETRRELGAMTLPFEKAPSDAQGVN
NT seq 3216 nt   +upstreamnt  +downstreamnt
atgaagcggatgctgatcaatgccacgcaggccgaagaacgccgcctggccatcgtcgac
gggcaaaagctcctcgactacgaaatcgagatcgaagggcgcgaacagcgcaagggcaac
atctacaaagccgtcgtgacgcgcgtcgagccctcgctcgaagcctgtttcgtcgactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaagcaatacttcgccgaa
ggcgtttccgccaaccaggcgcgcatccaggacgtcatcaaggaaggccaggaactggtc
gtccaggtcgagaaggaagaacgcggcaacaagggcgcggccctcaccaccttcatctcg
ctggccggccgctatgtggtgctgatgcccaacaatccgcgcggcggcggcgtgagccgg
cgcatcgagggcgacgaccgcgccgaactcaaggaggcgatggaccagctcgagtacccg
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgctcggcgcccgaactccag
tgggacctgaactacctgctcaagctctggacggccatcgacggcgcggccaagggcggc
aagggcgccttcctgatctaccaggaatcgtctctcgtcatccgcgcgatccgtgattac
ttcaatcacgacatcggcgacatcctgatcgacaccgacgacatctacgagcaggcgcag
cagttcatggcgcacgtcatgccagagcatgccgcccgcgtgaagcgctaccgcgacgac
gccgcgctgttcagccgcttccagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcagctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtctcggtc
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaaccgccacgcgcacc
aacctcgaagccgccgacgaagtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggacgagtcgaagaaccgccgcgaagtcgaaagccgc
ctgcgcgacgcgctgcggcaagaccgcgcccgcgtgcagttcggctcgatcagcaagttc
ggcctgatggaaatgagccgccagcgcctgaagccggcgctcagcgaaggctcgtcgatc
ccctgcccgcgctgcggcggctcgggccacatccgcgacaccgaatcgagcgcgctgcag
atcctgcgcatcattcaggaagagtgcctgaaggacaacacggccgccgtgcacgtccag
gtgccggtcgaagtggcctcgttcctgctgaacgaaaagcgccccgagatcgccaagatc
gaactcaagcagcgcgtcaccgtgctgatggtgcccaacaagacgctcgaaacgccgaac
tacaagctcgaacgcctgaagcacgacgatccgcgcctcgaccatatcgaagccagctac
aagatggccgacgagatcgaggaccccacctcggtcacgcgccgctcgcaggagcccacc
aacaagcagacgccggtcatcaagggcgtgctgcccgatgcgcccgcgcccgtggtgccg
cccaagcccgaagcggtgcgcgcgcctgcggccgttgctccggcaccggttgcgccgcct
gtcgcgagcgcaccggcaccggccgagaccggcttcttcgcccgcatcaagagctggttc
ggcggcacgccggcaccggctcccgcgccggccgtgattccgatcgagcctccgaagccc
gcgcgccgtgatggcggccgcccgggccgcgacggcgaagcgcgcggcgcccgcgatggc
gagcagcgccgcggtggccgcggcggcgaaggccgcggtgaaaacggcagccgctccggt
ggccgcgacggcgaacgccgcggcggccgcggtggcgaacgccgtgaaggacgcagcagc
gagatccgcagcgaagccgcccagccgcgcgagcagcgtgaacaacgcgagccgcgcgag
gtccgcgaacctcgcgaaccccgtgaagcacgcggcccgcgcgaaggcgaacagcgccgc
ggtggccgtggcgagcgccgcgaaggcgaaggccgtgaggcacggccggcaccggccgag
ctgatcgacggcagcctcgaagcgcagcaactggtatcgggtgcaccggccggcgatgag
ggcaatgcgccggcggagcgcgcgccccgcgcccgcggcgaacgccgggaacgcggtgaa
cgtggcgagcgggctgagcgcggtgagcgcagcgaaccgcgcaatggcaccgatgctccg
cgtgaagcatccggcggcgacaacgttgccgcgcaggacggcgcgcaagccgaacgcgca
ccgcgcggtggccgtgaagaacgcgctccgcgaggcgaccgcaacgacggccgccgcgag
cgccgcagcgaaggccagccgcgtttcagcaacggcgaagcaccggcaaacctcgacgag
gcggacatccgcatcaccgagtcggccgagatggcgccggccaacgaaggcgagaccggc
accggcgagcagcaggcaccgcgccgcgaaggcgaagagcgccgcggccgttcgcgcgac
cgctacggccgcgaccgccgcgagcgcggtccgcgcgacgacggcgaagccagcgtggcc
ggcgcatcggccgacaatgccgaggccagcgaaacaccggcacggcagcagccgctggca
acggccgaacgcgccgcagtgcccgaagaagaagcacgcgaaccggcaccgcggagctac
ttcgatcgtcctgccgcagcagcccccgcaacgcccgccgccacggtcgctgcagtcgcg
gtggcacctgtcgccgccgagagcagcagcaagcccgcggccgcggccgacggccgtgca
ctgccgaaggtgcagcacttcgagctgcctctgagcgaactcgcgcaaatcgccgagaac
tcgggcctgcaatgggtgaactcggatgccgagcgcattgcgcaagcccgcgcagcgatc
gcggccgagccgaagccggtgcacgtgccgcgcgaacgcccgcccgcgatcgtgctcgac
gacggtccgctggtgctggttgaaacccgccgcgaactcggtgcgatgacgctgcctttc
gaaaaggcgccgtccgacgcgcaaggcgtgaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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