KEGG   Variovorax paradoxus B4: VAPA_1c16650
Entry
VAPA_1c16650      CDS       T02835                                 
Name
(GenBank) putative farnesyl-diphosphate synthase
  KO
K00795  farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd00900  Terpenoid backbone biosynthesis
vpd01100  Metabolic pathways
vpd01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09100 Metabolism
  09109 Metabolism of terpenoids and polyketides
   00900 Terpenoid backbone biosynthesis
    VAPA_1c16650
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:vpd01006]
    VAPA_1c16650
Enzymes [BR:vpd01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.1  dimethylallyltranstransferase
     VAPA_1c16650
    2.5.1.10  (2E,6E)-farnesyl diphosphate synthase
     VAPA_1c16650
Prenyltransferases [BR:vpd01006]
 Terpene biosynthesis
  Prenyl diphosphate synthase
   VAPA_1c16650
SSDB
Motif
Pfam: polyprenyl_synt UbiA
Other DBs
NCBI-ProteinID: AGU48774
UniProt: T1X8W6
Position
1:1799538..1800455
AA seq 305 aa
MSAVKAVEWDAARLASWSDPYLARVEAALSRWVGVDAPVLLGDAMRYAVLDGGKRLRPLL
VLAASEAVGGNAAAALRAACATELIHAYSLVHDDLPSMDNDVLRRGKPTVHVKFGEADAL
LAGDALQALAFELLTPDGDEIPASIQAMLCRLLARAAGSQGMAGGQAIDLASVGLALNEA
QLREMHRLKTGALLQGSVEMGAACAGAVASDALAALRDYGAAIGLAFQVVDDILDVTADS
QTLGKTAGKDAAADKPTYVSLWGLDGARAQARQLLAESLAALDRSGLADTAALRALAHMV
VDRDR
NT seq 918 nt   +upstreamnt  +downstreamnt
atgagcgcggttaaagcggtggaatgggatgctgcacgcctggccagctggagcgacccg
tacctggcgcgcgtcgaggcggcgctttcgcgctgggtcggcgtcgatgcgccggtgctg
ctcggcgatgccatgcgctatgccgtgctggacggcggcaagcggctgcggccgctcctg
gtgctggccgcgagcgaagcggtcggcggcaatgcggctgcggcgctgcgcgcggcctgt
gcaacggaactgatccacgcctactcgctggtgcacgacgacctgccgagcatggacaac
gacgtgctgcggcgtggcaagcccacggtgcacgtgaagttcggcgaagccgatgcgctg
ctggccggcgatgccttgcaggccctggccttcgagctgctgacgcccgacggcgacgag
attcccgcatcgatccaggccatgctgtgccggttgctcgcgcgtgccgcgggcagccag
ggcatggcgggcgggcaggccatcgacctggccagtgtgggcctggcgctgaacgaagcg
cagctgcgcgaaatgcaccgcctgaaaaccggcgcgctgctgcagggcagcgtcgagatg
ggcgcggcctgtgccggtgccgtggcatccgatgcgctggccgccctgcgcgactacggc
gccgccatcggcctggcgttccaggtggtcgacgacattctcgacgtcacggccgattcg
cagaccctcggcaagacggccggcaaggatgcggccgccgacaagcccacctatgtttcg
ctgtggggcctcgacggcgcgcgtgcgcaggcgaggcagctgctggccgaatcgcttgcg
gcgctggaccgcagcggccttgccgataccgcggccttgcgcgcgctggcccacatggtc
gtcgaccgcgaccgatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (3)   
   KEGG MODULE (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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