KEGG   Variovorax paradoxus EPS: Varpa_0644
Entry
Varpa_0644        CDS       T01392                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Varpa_0644
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpe03021]
    Varpa_0644
   03400 DNA repair and recombination proteins [BR:vpe03400]
    Varpa_0644
Enzymes [BR:vpe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Varpa_0644
Transcription machinery [BR:vpe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Varpa_0644
DNA repair and recombination proteins [BR:vpe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Varpa_0644
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ADU34865
UniProt: E6V6K2
Position
717672..721901
AA seq 1409 aa
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEFGDEFVAKM
GAEGIRDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPQWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDANEV
ELTAKVAVRITEYTKDKETGVFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIERSAKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRILG
RSAADDVLHPENRSVLLKAGEMFDEDNIEVLEAQGVDEVKVRTALTCETRFGICATCYGR
DLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIGFN
ATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLAVKADQQIKAGHVLANW
DPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DASGAEVKIPGTDHSVTIGFPIGSLVQIRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGGVYEDLVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARRAKDAMDDAERRA
IAESEAAELAGSSSDATSTADASEGAATE
NT seq 4230 nt   +upstreamnt  +downstreamnt
atgaaatcgctactcgacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaagatccgttcgtggtctttcggtgaagtgaagaag
ccagagacgatcaactaccgcacgttcaagcccgagcgcgacggtctcttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcactcagaccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccatcgcgtctgggcctcgtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctatgtgatcaccgatccgggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactacgacgccaagcgcaaggaattcggcgatgaattcgttgccaagatg
ggcgccgaaggcatcagggatctgctcgaaggcatcgaactcgacagcgagatcgagcgc
ctgcgcggtgacctgaccggctccgaagtcaaggtcaagaagaactccaagcgcctgaag
gtgctggaagccttccgcaagtcgggcatcaagccccagtggatggttctcgaagtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtatcgccgcgtcatcaaccgcaattcgcgtctgcgccgcctc
ttggagctgaaggctccggaaatcatcgcgcgcaacgaaaagcggatgctgcaggaggct
gtcgactcgctgctggacaacggccgccgcggcaaggccatgacgggcgccaacaagcgc
gcactcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaacttg
ctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcactcgagctgttcaagcccttcatcttc
tcgcgcctcgaagccatgggcatcgcgaccacgatcaaggctgccaagaaggaagtcgaa
tcgggcacgccggtggtctgggacatcctggaagaagtgatcaaggaacacccggtcatg
ctgaaccgtgcgcctacgctgcaccgtttgggcatccaggcgttcgagccgatcctgatc
gaaggcaaggccattcagctgcacccgctggtttgcgccgccttcaacgccgacttcgac
ggcgaccagatggccgttcacgtgccgctgtcggtggaagcgcaaatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggcgaaccgtcgatcgttcct
tcgcaggacgtggtgctgggtctgtactacacgacccgcgaccgcatcaacggcaagggc
gagggcctgatcttctccgacatcggtgaagtgcagcgcgcgctggacgccaacgaagtc
gaactcaccgccaaggtggcagtgcgcatcacggaatacaccaaggacaaggaaaccggc
gtcttcacgccgtcgacctcgctcgtggacaccaccgtgggccgtgccctgctgtccgag
atcctgcccaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgtctcgttccgcaagtgcggcctgaaagagaccgtcgtgttcgcc
gacaagctgctgcaaaacggcttccgcctggcgaccaaggccggtatctcgatcgcgatc
gacgacatgctggtgcccgccgagaagcacggcatcatcgagcgctccgccaaggaggtg
aaggagatcgaacagcagtacgtttccggtctcgtgacctccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtcgaaggtcatgatggccaagctc
tcgaagcagaaggtcatcgaccgccacggcaaggaagtcgagcaggagtcgttcaactcc
atctacatgatggccgactccggcgcccgcggttccgcagcgcagatccgccaggtggcc
ggcatgcggggcctgatggccaagccggacggctcgatcatcgagacgcccattaccgcg
aacttccgcgaaggcctgaacgtgctggagtacttcatctccacccacggtgcccgtaag
ggtctggccgacacggcgctgaagacggcgaactcgggttacctgacccgtcgtctggtc
gacgtgacgcaagacttggtcgtgaccgagcaggactgcggtacgcatggcggctacctg
atgcgcgcgatcgtcgaaggcggtgaagtgatcgagtcgctgcgcgaccgaatcctcggc
cgctcggctgcggacgatgtgctgcacccggaaaaccgctcggtgctgctgaaggccggc
gagatgttcgacgaagacaacatcgaagtcctggaagcccagggcgtcgacgaagtcaag
gtccgcaccgcgctgacctgcgaaacccgcttcggtatctgcgcaacctgctacggccgc
gatctgggtcgtggcggcctgatcaacatcggcgaagccgtcggtgtgatcgcggcgcag
tcgatcggcgaacccggcacgcagctgacgatgcgtacgttccacatcggtggtgcggca
tcgcgtgcggccatcgcttcgagcgtggaagccaagtcgaacggttcgatcggcttcaac
gccacgatgcgctacgtgaccaacagcaagggcgagctggtcgtgatttcgcgttcgggc
gagatcgtcattcatgacgagcacggccgcgagcgcgagcgccacaaggtgccgtacggc
gcgaccctggccgtcaaggccgaccagcagatcaaggccggccacgtgctcgccaactgg
gacccgctgacgcgcccgatcattaccgagttcgccggcaagacgcagttcgagaacgtc
gaggaaggcctcacggtcgccaagcaggtggacgaagtgaccggcctgtcgaccctggtc
gtgatcgatccgaagcgccgcggcgctgccaaggtcgtgcgtccgcaggtgaagctcatc
gacgcctccggcgccgaagtgaagatcccgggcaccgaccactcggtgacgatcggcttc
ccgatcggctcgctggtgcagatccgcgacggccaggacgtgggccccggcgaagtgctg
gcgcgtattccggtcgaaggccagaagacccgcgacatcaccggcggtctgccgcgtgtt
gccgagctgttcgaagcgcgttcgccgaaggacaagggcatgctggccgaaatgaccggt
accgtgtcgttcggcaaggaaacgaagggcaagattcgcctgcagatcaccgatcccgaa
ggcggcgtctacgaagacctcgtgccgaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgagtcggtggtcgacggtccggcggacccgcaggacatcctgcgc
ctgctgggttcggaagaactggcgcgctacatcgtggacgaagtgcaggacgtgtaccgc
ttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgacaacatcggcgagaccggctacatctccggcgaacaggtcgaacgc
agcgaaatgctcaacaccaacgacgccctgcgcgccgaaggcaagatccccgcgacgttc
acgaacctgctgctgggtatcacgaaggcatcgctgtcgaccgactcgttcatctcggct
gcttcgttccaggaaacgacgcgcgtgctgaccgaagccgcgatcatgggcaagcgcgac
gaactgcgcggcctgaaggaaaacgtcatcgtcggccgcctgattcccgcaggcaccggc
atggcttaccaccaggctcgccgggccaaggacgcgatggacgacgccgagcgccgcgcc
atcgccgaatcggaagccgccgaactggcgggttcctcgagcgatgcgacgagcacggcc
gacgccagcgaaggcgccgcgaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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