KEGG   Variovorax paradoxus EPS: Varpa_1682
Entry
Varpa_1682        CDS       T01392                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe03030  DNA replication
vpe03410  Base excision repair
vpe03420  Nucleotide excision repair
vpe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Varpa_1682
   03410 Base excision repair
    Varpa_1682
   03420 Nucleotide excision repair
    Varpa_1682
   03440 Homologous recombination
    Varpa_1682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vpe03032]
    Varpa_1682
   03400 DNA repair and recombination proteins [BR:vpe03400]
    Varpa_1682
Enzymes [BR:vpe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Varpa_1682
DNA replication proteins [BR:vpe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Varpa_1682
DNA repair and recombination proteins [BR:vpe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Varpa_1682
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Varpa_1682
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc
Other DBs
NCBI-ProteinID: ADU35892
UniProt: E6V4Q1
Position
1865384..1868197
AA seq 937 aa
MTDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYA
ACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLTVPDVEADDVI
GTLAKIAAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPNLMVD
YQTLVGDSVDNVPGVEKVGPKTAAKWLLEYGSLDALVERAAEVKGAAGENLRKALDKLPL
SRKLVTIRTDCDLEGHVTGLPSLEGLPVGAPQTSELKPFYEKFGFKSLVKTLEAQEVPPE
LIEENIKKKAAKANTDQGGLFDEPSDLSALDAAAPASNLKYDTITTWEQFDGWLAKLEAA
ELAAIDTETTSLDEMVAQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLAKLKPWL
ENPEKKKLGQHIKYDRHVFANHGIEVEGYAHDTMLQSYVLEVHKPHGLASLAERHLGRSG
ISYEDLCGKGAHQISFSQVDIAKAAEYSCEDSDQTLDVHRTLWPQLEANEKLRFVYQLEM
DSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFF
TKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPR
TGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIEL
RIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSF
GLAKNLGIETKAAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEINSP
NGPRRGGAERAAINAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPEA
EVEWVRAEIPRLMAGVAALKVPLLAEIGIGPNWDKAH
NT seq 2814 nt   +upstreamnt  +downstreamnt
atgaccgacaagaaaacgctgctgctcgtcgatggctcgagctatctctaccgagccttc
cacgccatgcccgacctgcgcgccgtgcccggcgacccgaagagcccggccaccggcgcc
atccggggaatgatcaacatgatgaccgcgctgcgccgcgaggtgcgcgccgactacgcc
gcctgcatcttcgatgcacccggcaagaccttccgcgacgactggtatcccgaatacaag
gccaaccgctcgccgatgcccgacgacctgcgcagccagatcgaccccatccatgaagtg
gtgaagctcctgggctggccggtgctcacggtgcccgacgtggaggccgacgacgtgatc
ggcacgctcgccaagatcgccgccgcgcagggcgtcgaggtgatcgtctccagcggcgac
aaggacctgagccagctggtcgacgagcacatcaccatcatcgacacgatgaacggcaag
aagcgcgacgtggcgggtgtgacggccgagttcggcgtgccgccgaacctcatggtcgac
taccagacgcttgtgggcgactcggtcgacaacgtgcccggtgtcgagaaggtcggcccg
aagacggcagccaaatggctgctcgaatacggctcgctcgatgcgctggtcgaacgcgct
gccgaagtgaaaggcgccgccggtgaaaacctgcgcaaggcgctggacaagctgccgctg
agccgcaagctcgtcacgatccgcaccgactgcgacctcgaaggccacgtcaccggcctg
ccgtcgctcgaaggcctgccggtcggcgcgcctcagaccagcgagctcaagcccttctac
gagaagttcggcttcaagagcctcgtgaagacgctcgaagcgcaggaagttccgcccgag
ctgatcgaggaaaacatcaagaagaaggccgccaaggccaacaccgaccagggtggcctg
ttcgacgagccttcggacctgagcgcgctcgacgccgccgcgccagcgagcaacctcaag
tacgacaccatcaccacctgggagcagttcgacggctggctcgcgaagctcgaagctgcc
gagctcgcagccatcgacaccgagaccacatcgctcgacgaaatggtcgcgcagatcgtc
ggcgtgagcttcagcgtcgagccgggcgaggcggcctacattccgctcacgcacaactat
cccgacgcgcccgcgcaactgcccatcgacgaggtgctcgcgaagctcaagccctggctc
gagaaccccgagaagaaaaaactcggccagcacatcaagtacgaccgccatgtgttcgcc
aaccacggcatcgaggtcgagggctatgcgcacgacaccatgctgcagagctacgtgctc
gaagtgcacaagccgcacggcctcgcgtccctggccgagcgccacctgggtcgcagcggc
atctcctacgaagacctgtgcggcaagggcgcgcaccagatttccttcagccaggtcgac
atcgccaaggcggccgaatactcgtgcgaagacagcgaccagaccctggacgtgcaccgc
acgctgtggccgcagctcgaagccaacgagaagctgcgcttcgtctaccagctcgaaatg
gattcgagcgaggcgctctaccgcgtcgagcgcaacggcgtgatgatcgacagcgccacg
ctcgccgcgcagagccacgaactcggcacgcgcatcatggcgctggagcaggaggcctac
gagatcgcgggccagcccttcaaccttggttcgcccaagcagatcggcgaaatcttcttc
accaagctgggcctgccggtggtcaagaaaacaccgagcggcgcacccagcaccgatgaa
gaagtgctggagaaactggccgaggactacccgctccccgccaagatcctcgagcaccgc
ggcctgtcgaaactcaagggcacctacaccgacaagctcggccagctcgcgaacccgcgc
accgggcgcgtgcacacgcactacgcgcaagctgtggcggtcacggggcgcctgagcagc
aacgacccgaacctgcagaacatcccgatccgcacgcccgaaggccgtcgtgtgcgcgag
gctttcgttgcgcccgcaggcagcgtgatcgccagcgccgactactcgcagatcgagctg
cgcatcatggcccacatcagcggcgacgagtcgcttctgcgtgccttcaccgaaggcatc
gacgttcaccgcgcaaccgccgccgaagtgttcggctccacgcccgaccaggtgtcgagc
gagcagcgccgctatgcgaaggtcatcaacttcgggctcatctacggcatgagcagcttc
ggcctcgcgaagaacctgggcatcgagaccaaggccgcagcctcctacatcgagcgctac
ttcgcgcgctacccgggcgtgaaggcgtacatggacgagaccaaggcgctcgccaaggag
cagggttacgtcgagaccgtgttcggccggcgcttgtacttgcccgagatcaattcgccc
aacggcccgcgccgcggcggtgccgagcgcgcggccatcaacgcgccgatgcagggcacg
gcggccgacctcatcaagctgagcatggtcaaggtacagaacgtgcttgacgaagaaaag
cgcgccaccaagatgatcatgcaggtgcacgacgaactggtattcgaagtgcccgaggcc
gaagtcgaatgggtgcgcgccgaaatcccacgcctgatggccggcgtggcggcgctcaag
gtgccgctgctcgccgagatcggcatcggtcccaactgggacaaggcccactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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