KEGG   Variovorax paradoxus EPS: Varpa_5233
Entry
Varpa_5233        CDS       T01392                                 
Name
(GenBank) transcriptional regulator, Fis family
  KO
K03557  Fis family transcriptional regulator, factor for inversion stimulation protein
Organism
vpe  Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vpe03000]
    Varpa_5233
   03036 Chromosome and associated proteins [BR:vpe03036]
    Varpa_5233
   03400 DNA repair and recombination proteins [BR:vpe03400]
    Varpa_5233
Transcription factors [BR:vpe03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    Varpa_5233
Chromosome and associated proteins [BR:vpe03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Varpa_5233
DNA repair and recombination proteins [BR:vpe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      Varpa_5233
SSDB
Motif
Pfam: HTH_8 HTH_30 Phage_NinH Xre-like-HTH
Other DBs
NCBI-ProteinID: ADU39389
UniProt: E6V680
Position
complement(5692053..5692289)
AA seq 78 aa
MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWL
GLNRNTLRKKLVEHKLLK
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaagaaacacatcgaggactgcgtgcgcaccagtctggacagctactttcgcgac
ctgcgcggcaccgaacccgacggcatgtacgagatgctcgtgcgcgtggtcgagaagccg
ctgctcgacgtcgtgatgacgcgcgccgaaggcaaccagtcgaaggccgcgcaatggttg
ggcctcaaccgaaacacgctccgcaagaaattggtcgagcacaaacttttgaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system