KEGG   Vibrio parahaemolyticus UCM-V493: VPUCM_0502
Entry
VPUCM_0502        CDS       T03116                                 
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vph  Vibrio parahaemolyticus UCM-V493
Pathway
vph03410  Base excision repair
vph03430  Mismatch repair
vph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VPUCM_0502
   03430 Mismatch repair
    VPUCM_0502
   03440 Homologous recombination
    VPUCM_0502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vph03400]
    VPUCM_0502
DNA repair and recombination proteins [BR:vph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     VPUCM_0502
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     VPUCM_0502
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VPUCM_0502
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB
Other DBs
NCBI-ProteinID: AHI98460
Position
1:541417..543156
AA seq 579 aa
MIEIQRRPEPDLSLLPDSIPPILKRIYINRGITDIAQLETSARGLHSYQKLGGIEQAVEL
LFQAIQEQKRIIVVGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVD
QALELGAEMIMTVDNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPEVDAMVNPNLDSCA
FPSKALAGVGVAFYLMMALCVHMRKHNWFAQQGMQEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFG
VELLMCNNMHAARRMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLSLFQ
RDWHQGVIGILASRIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGL
IIKFGGHAMAAGLTIKEQDFERFSRLFDEVVKKELDEAALKGVILTDGELKPEEFSMHIA
EQLRAGGPFGQAFPEPIFDGEFKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVD
LRRWPDASVKTVRLAYKLDVNEFRGNQSLQLMIDHIEAK
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgatagaaattcaacgacgtcccgaaccggatctttcccttctcccagattccattcct
ccgatcttaaaacgcatttacatcaatcgcggtattactgacatcgcgcagctagaaacc
tctgctcgtggattgcattcgtaccaaaagcttggcggcattgagcaggcggttgagttg
ttgttccaagcgattcaagagcaaaaacgcatcatcgtggtgggtgactttgacgcagat
ggcgcaacgagttctgctctttctgtattggcattgcgtatgcttggcagcaataacgtc
gattacttggtgccgaaccgctttgaagatggctacggtttgagcccagaggtggtcgat
caagcattggaacttggcgcagaaatgatcatgacggtcgacaatggcgtatcgtcgatt
gaaggtgtgcgctacgccaaagaaaatggcattaccgtattggtgacagaccaccatttg
ccaggacaagttctgccagaagtggatgcgatggtgaacccaaacctcgacagttgtgcg
tttccttctaaagcgttggctggcgttggtgtggcgttctatctgatgatggcgttgtgc
gttcacatgcgcaaacacaactggtttgctcagcaaggcatgcaagagccgaaactgatg
gagctgatcgaccttgtcgcactgggcactgttgctgatgttgtgccgcttgatgagaac
aaccgaattctggtgcatcaagggttgcagcgcattcgtgcggggaaagcgcgcccaggt
attcaggcactgattgaagtggcgaaacgcgatgcgcgacgtttggtggcatcggacttc
ggctttgcattggggccgcgtattaatgccgctggccgtttagacgacatgtcttttggt
gttgagctactgatgtgtaacaacatgcacgccgcacgtcgcatggccagtgagcttgat
gggctcaatcagactcgtaaagagattgaagaaggcatgaagcaagaagcgatggcgttt
tgtgaacgtttgcagtttggcgaaaacagcgagctgccatacggcttatcgctgttccaa
cgcgattggcaccaaggtgtgattggtattctcgcttcgcgtatcaaagagaaattccat
cgcccagtcattgcctttgctgacggtggtgaagggacgatcaagggttcttgtcgttcg
attcctggattacacatgcgtgatgcgttggacttcatcgatacgcaaaatccaggtttg
atcatcaagtttggcggtcacgcgatggcggcaggcttaaccatcaaagagcaagatttt
gagcgtttcagtcgtttattcgatgaagtggtgaaaaaagagctcgacgaagcggctcta
aaaggcgtgattcttactgatggcgagttaaaaccggaagagttttctatgcacattgcg
gagcagttgcgcgctggtgggccattcggacaagcttttcctgagccaatctttgatggt
gagtttaaggtgttgcaccaaaaattggtgggagaaaaacatcttaaactgatgttggag
cctttatacaaagggcatccgaccaatgtgatgattgatggaattgcatttaacgtcgat
ttacgccgttggcctgacgcatcggtcaaaactgtacgtttggcctacaagctggatgtg
aatgaatttcgtggcaaccaatcattgcaactgatgattgatcacatcgaagccaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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