KEGG   Vibrio parahaemolyticus UCM-V493: VPUCM_2640
Entry
VPUCM_2640        CDS       T03116                                 
Name
(GenBank) RNA polymerase sigma factor RpoS
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
vph  Vibrio parahaemolyticus UCM-V493
Pathway
vph05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vph00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VPUCM_2640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vph03021]
    VPUCM_2640
Transcription machinery [BR:vph03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VPUCM_2640
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_20
Other DBs
NCBI-ProteinID: AHJ00599
Position
1:complement(2860477..2861466)
AA seq 329 aa
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGE
IGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGN
LGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARE
LSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQ
IQVEGLRRLREILIKQGLNMENLFNVEDD
NT seq 990 nt   +upstreamnt  +downstreamnt
atgagtatcagcaacacagtatccaaagttgaagagtttgaatacgacaatgcgtcagag
acgaccattgataacgaactcgaaaaatcatcatctactaccgaaggcaaaacagctgtc
cgtgaagagtttgacgcgagcagtaaaagcctagacgcaactcaattgtatctaggtgaa
attggcttctcacctctacttactgctgaagaagaagttctttacgcccgcagagcattg
cgtggtgatgaagcggctcgtaagcgcatgatcgaaagtaacttgcgtttagtagtaaaa
atttctcgtcggtacagcaaccgtggcctagcgctactcgatcttattgaagaaggtaac
ctcggtttgatccgagcggttgaaaaattcgatccagaaagaggcttccgtttctcaact
tacgcaacatggtggatccgtcaaacgatcgaacgtgcgttgatgaaccaaactcgcacc
attcgcttgcctattcatgtcgtgaaagagctgaacatttatctgcgtactgcgcgtgaa
ctttctcaaaagctcgatcatgaaccaactgcagaagaaattgctgctcaattagatata
ccagtagaagatgtcagcaaaatgctgcgtcttaacgagcgtattagctccgttgatacc
ccaattggtggtgacggtgaaaaagcgcttctggatattattcctgacgcaaacaactct
gatccagaagtgtcgactcaagatgatgacatcaaatcgtctctgatccattggttggaa
gagttgaatccaaaacaaaaagaagtgcttgcacgccgttttggtttgcttggctatgag
ccgtctacgcttgaagaagtgggacgagagattggtcttactcgtgagcgtgtacgtcaa
attcaagtggagggtttacgtcgacttcgtgaaatcctaattaaacaaggcctaaatatg
gaaaacttgtttaacgtcgaagacgattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system