KEGG   Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_06605
Entry
M636_06605        CDS       T02760                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vpk  Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk02020  Two-component system
vpk02040  Flagellar assembly
vpk05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vpk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    M636_06605
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    M636_06605
  09142 Cell motility
   02040 Flagellar assembly
    M636_06605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpk03021]
    M636_06605
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vpk02035]
    M636_06605
Transcription machinery [BR:vpk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     M636_06605
Bacterial motility proteins [BR:vpk02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    M636_06605
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r4_2 EIAV_Rev
Other DBs
NCBI-ProteinID: AGQ96932
Position
II:1463639..1464367
AA seq 242 aa
MLDMNPQETYTAPEEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIG
LIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRLDWRSRKTRQQAHELNDVTRDLT
RSLGRMPTDSEIIKALGTDEQDYYNRQNAALAGEMQSLDQLMENSTDSHFGGQYDGMEHE
HIRRSLDSALGRLSKRDQLLLTLFYQHELNLHEIALVLDLTPPRICQLHKQALKQLNQLM
SS
NT seq 729 nt   +upstreamnt  +downstreamnt
atgttagacatgaaccctcaagaaacgtacaccgcaccagaggaagtgaacacaccatca
cgcccaattgatgaaaacgcacttttgcaacgtcatcaagtgatggtgaaacgcgtagtt
aaccaacttcgcgttcatgccacttcccattgcagtatcgaagatatgcagcaaattggt
cttatcgcgctggttgaagcaggacgtcgttatggagacattgacgatactcacttcccg
gcatttgcggtttgccgcgtacgtggcgcgatcttagatgagctgcgccgtttagactgg
cgctcacgtaagacacgtcagcaagcccatgagcttaacgacgtcactcgtgacctcacc
cgctcgttaggtcgcatgccaacggactcagaaatcatcaaagctctcggcaccgacgag
caagattattacaaccgtcaaaacgcggcgcttgcaggtgaaatgcaaagtctcgatcaa
ctgatggaaaacagcaccgacagccactttggtgggcaatacgacggcatggagcacgag
cacattcgtcgtagcttagacagcgcactaggccgactgtcaaagcgagatcaattgcta
ctgacgctgttttatcaacacgaactcaatttacacgaaatagccctcgtcttggatctg
acgccacctcgaatttgtcagcttcataaacaagcgctgaaacaactcaaccaattaatg
tcctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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