KEGG   Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_23410
Entry
M636_23410        CDS       T02760                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
vpk  Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk02024  Quorum sensing
vpk03018  RNA degradation
vpk05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vpk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M636_23410
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    M636_23410
   05111 Biofilm formation - Vibrio cholerae
    M636_23410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpk03019]
    M636_23410
   03036 Chromosome and associated proteins [BR:vpk03036]
    M636_23410
Messenger RNA biogenesis [BR:vpk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     M636_23410
Chromosome and associated proteins [BR:vpk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    M636_23410
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AGQ99798
Position
I:3235506..3235769
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPQGDRPQEKSED
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccatttctaaacgcgctacgtcgtgagcgtatt
ccagtgtctatctaccttgtgaacggtatcaaactacaaggtcagatcgaatcattcgat
caattcgtgatcctgctgaaaaatactgtaaaccaaatggtgtacaagcacgcgatttct
acagttgtgccggctcgtccagtgagccaccacagcggtgatcgtcctcaaggcgaccgt
ccacaagagaaatcagaagattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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