KEGG T02760: M636

Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_23455

Entry

M636_23455        CDS       T02760

Name

(GenBank) exoribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

vpk Vibrio parahaemolyticus O1:K33 CDC_K4557

Pathway

vpk03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:vpk00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M636_23455
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpk03019]
    M636_23455
   03016 Transfer RNA biogenesis [BR:vpk03016]
    M636_23455
Enzymes [BR:vpk01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     M636_23455
Messenger RNA biogenesis [BR:vpk03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     M636_23455
Transfer RNA biogenesis [BR:vpk03016]
Prokaryotic type
  tRNA degradation factors
   M636_23455

SSDB

Motif

Pfam:

RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind

Other DBs

NCBI-ProteinID:

AGQ99807

Position

I:3243920..3246427

AA seq 835 aa
MSDNIPNDPFADRESQNYENPIPSREFILEFLEQAGVPMNRNDLFEALKLAGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHH
QMKNIIHGDFVLVQPTDNSKRGRREGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRIS
QDILIPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PYEWPEAVEKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISESGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAM
YKVLKEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIA
NVTSFGFFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLA
VNLDDKQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKEKKRAATRSSSKEGATARAVPA
IEPTKRPEQTDSGRKRKGPKRGDDDSAKKPKVKKAHKKKPHSKPKKTKRTKQDAQ

NT seq 2508 nt +upstreamnt +downstreamnt
atgtcagacaatattccaaacgatccattcgcagatcgtgaatcccaaaattacgaaaat
ccaattccaagccgagagttcatcctcgagttccttgagcaagcgggcgtaccaatgaac
cgcaatgacttgttcgaagctttaaagttagcgggtgaagagcaatacgaagggttgcgc
cgccgtttacgtgccatggaacgagatggtcaactggtgtttacccgccgtcagtgctac
gcattgcctgaaaaacttgaaatggtgaaaggttacgtgattggccacaaagatggtcac
ggttgggtacgtccagaaggcagcgtcggcaaggacgatgatattttgctgccacatcac
caaatgaagaacatcattcatggtgatttcgtgctggtgcaaccaacggacaacagcaag
cgtggtcgtcgtgaaggtcgcttagttcgcgtacttgaagagcgcaatagccagattgtt
ggccgcttcttccttgagtacggctactcatatgttgtgccggatgattcgcgcatcagc
caagatattctgatcccgaacgagcataaagctggcgctcgtatgggtaatgtcgtggtg
attgaaattaccgatcgtggttctcgctcgcgtggcatgatgggtaaagtggttgaagtt
cttggcgaaaatatggcgccaggtatggaaacacaaatcgcaattcgcacccatcaaatc
ccttatgagtggccagaagcggtcgaaaaacaaatcgtaaacttgggcgaagaagtgcct
gaagaagcgaaagttggccgtgttgacttgcgtgaattgccgctcgttaccattgacggt
gaagatgcgcgagacttcgatgacgccgttttctgtgagaagaaaaaagatggtggttgg
cgtctttgggtcgcaatcgcagacgtaagctactacgtgcgcccagattcagcgttagac
aaagaagccatcaaccgtggtaactctgtgtacttcccatcgcaagttgtcccaatgttg
cctgaagtgctttcaaacggtttgtgttcgcttaacccgcaagtggatcgcttgtgtatg
gtgtgtgagatgaccatttctgaaagcggtaagctctccagctacaagcactacgaagcg
gtaatgaattcccacgctcgtctcacatacagcaaagtgagcgcgattcttgaaggtgat
gaagaactgcgtgaacgctaccagccactcgtgtcgcatcttgaagagttgcacgcgatg
tacaaagtgttgaaagaagcgcgtgatcaacgtggtgcgattgagtttgagaccgtcgaa
accaaattcatttttaatgctgagcgcaagattgaaagcattgagccagtgattcgtaat
gatgcacataagatcatcgaagaatgtatgatcttagctaacattgcctcggcatcgttg
gtagaaaaagccaaagagcctgcactgtatcgtattcacgaatctccgggtgagctgcgc
ttgcaaggcttccgcgatttcctaagtgagctaggtttagagttgaaaggtggtttagag
ccttctccgacagactacgccgatctcgcgcgtcaaattgcaggccgtcaagaccaagag
ctgatccaaaccatgctgctgcgctccatgaagcaagcggtgtacaacgcagacaacgca
ggccacttcggtttggcgcttaagcgttacgcgcactttacgtcaccaattcgtcgttac
cctgacttgttgctgcaccgtgctatcaagtacttgatcgctaaagaagaaggccgcaac
caagaccgttggacgccaacgggtggttaccattactcattcgatgacatggacttctac
ggcgaacaatgttcaatgacagagcgccgcgctgatgatgcaacgcgtgaagttgcggat
tggttgaagtgtgaatacatgcaagatcacgtcggcgatgagctggaaggcgtgattgct
aacgtcaccagttttggcttcttcgtgcgcttgaccgatctgcatatcgatggtttggtg
cacatttcaacgcttgcgaacgactactaccagtttgatcctattggtcaaagacttatc
ggtgaaagcttcggtaacatctaccgtctgggtgatgcggtcaaagtaaaagtgctggct
gttaacctagatgacaagcaaattgactttgaattggtcgaaacaagtcgtaagctacgc
ggcgaaggtaagacagctaagaaacgagctgcggaagcgaaacgcaaagccaaagagaaa
aaacgtgcggcgacacgttcttcatcaaaagaaggtgctacagcgcgcgctgttcctgct
attgagccaactaagcgcccagaacaaacggattctggccgtaaacgcaaagggccaaaa
cgtggggatgacgacagcgcaaagaagccaaaggtgaagaaagcccacaagaaaaagcca
cacagtaagccaaagaaaaccaagcgcactaagcaagacgcgcagtag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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