KEGG   Virgibacillus dokdonensis: A21D_00956
Entry
A21D_00956        CDS       T05261                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
vpn  Virgibacillus dokdonensis
Pathway
vpn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vpn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A21D_00956
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpn03021]
    A21D_00956
   03019 Messenger RNA biogenesis [BR:vpn03019]
    A21D_00956
Transcription machinery [BR:vpn03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     A21D_00956
Messenger RNA biogenesis [BR:vpn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     A21D_00956
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N Spore_III_AA OB_RNB AAA_22 ATPase_2 AAA AAA_18 Mor AAA_25 NACHT AAA_24 DUF6417
Other DBs
NCBI-ProteinID: AUJ24068
UniProt: A0A2K9IWD9
Position
complement(1036705..1037988)
AA seq 427 aa
MAGLTISRLETLTLKEIYQLAREYKISYYAKLTKKELIFAILKAQAEKDGYLFMDGILEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNGDDPETAKERVHFPALTALYPDRLMKLETKSNEISTRIIDLMTPVGYGQRGLIVAPPK
AGKTTLLKEIANSISENHPDAKLIILLVDERPEEVTDIERSVHPDVDVVSSTFDEVPESH
IKVSELVLERAMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSFTVLATALIDTGSRMDDVIYEEFKGTGNMELHLDRNLAQRRIFPAID
ILRSGTRKEELLVNKSHLDKMWAIRKTMQDSNDFLERFLRRLRASKNNEEFFQMMDEEMK
RRGMKRS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggcaggactaactatctcccgtttggagacgttaacattaaaagagatttaccaatta
gcaagagagtataaaatctcttattatgcaaagttaacgaaaaaagaactaatttttgca
attttaaaagcgcaagcggaaaaagatggctacctctttatggatgggatattagaaatt
attccttccgagggatttggttttttaagaccgattaactattcaccaagcgctgaagat
atttatatttcagcttcgcaaattagacgctttgatttacgtaatggtgataaagtatct
ggaaaggttcgacctcctaaagaaaacgaaagatattatggtctattacatgtagatgct
gtcaatggagatgacccagaaacagcgaaagaacgtgtgcatttcccagcgctaactgca
ttatacccagatcgcttaatgaagctagaaacgaaatcaaatgaaatatcaacacgtatt
attgatttaatgacacctgtcggttatggacagcgtggactaattgttgctccacctaaa
gctgggaagacaactttattaaaagagattgctaacagcatttctgaaaatcatccagat
gcaaaattaattattcttttagtagatgagcgccctgaagaagtaacagacattgagcgc
tctgtacatcctgatgtggatgttgtcagttcgacatttgatgaagttccggagagtcat
ataaaagtatcggagcttgtattagaacgggcaatgcgtttagtggaacataagcgagat
gttatcgttttaatggacagtattactcgtttggcgcgcgcgtataacctcgttattccg
cctagtggacgtacgttatcaggtggtattgatcctgctgcgtttcatcgtccaaaacga
ttttttggagctgctcgaaatatcgaagagggtggaagcttcacagtattagcgacagca
ttgatcgatacaggctcacgcatggatgatgtgatttatgaggaatttaaaggaaccggt
aatatggaattacacttagatcgtaatctggctcagcgtcgtatatttcctgctattgac
attttacggtctggaactagaaaagaagaattacttgttaataaatcgcacttggataaa
atgtgggctattcgtaaaacaatgcaagattctaatgattttctggaacgcttcttacgt
agattaagagcttcaaaaaataatgaagaatttttccaaatgatggatgaagagatgaag
cgacgtggcatgaaacgttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system