KEGG   Vigna radiata (mung bean): 106759988
Entry
106759988         CDS       T04126                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4 isoform X1
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
vra  Vigna radiata (mung bean)
Pathway
vra03022  Basal transcription factors
vra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106759988
  09124 Replication and repair
   03420 Nucleotide excision repair
    106759988
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vra03021]
    106759988
   03400 DNA repair and recombination proteins [BR:vra03400]
    106759988
Transcription machinery [BR:vra03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     106759988
DNA repair and recombination proteins [BR:vra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     106759988
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 106759988
NCBI-ProteinID: XP_014498896
UniProt: A0A1S3TYR0
Position
5:13572062..13577257
AA seq 292 aa
MPSAPSKIYADDVSLLVVTLDTNPFFWATFPFPFAEFLSQVLAFLNSILLLGQLNQVIVI
ATGCNSCAYVYDSSSERNHGATTGTMPALYSNLLHNINEFLARDRQLDALRKTGTVPSSL
LSGSLSMALCYIQRAFRLGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQRSMVPIDSC
YIGSNNSAFLQQASYITSGIYYKPPQLEGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRA
SCFCHKRTIDMGFVCSVCLSIFCEHHDKCSTCGSVFGQAQLDASAANRKRKA
NT seq 879 nt   +upstreamnt  +downstreamnt
atgccttctgcaccttcgaaaatctacgcagacgatgtgagccttctggttgtgacgcta
gacaccaatcctttcttctgggccactttccccttccccttcgccgagttcctctcccaa
gtactcgcctttctcaactcgatcctgctcctcggccagctcaaccaggtcatcgtcatc
gccactggatgcaactcctgcgcctatgtgtacgattcctcttccgaacggaaccacggt
gccaccaccggcacaatgcccgcgctttattccaacttactccacaatatcaacgagttt
ctcgctagggaccggcaattagacgctcttcgaaaaacgggaaccgtgccttcttcgctc
ctatcgggctccttgtccatggcgctttgttatatacagagagcttttcgcttaggacct
atgcctccgcagcctcggattttatgtttgcaaggcgctgccgatggaccagaacagtat
gtggcaatcatgaatgcaatattctctgcacagcgttctatggttcctatagattcttgt
tatattggctccaacaactctgcattcctccagcaggcttcttacataactagtggaata
tattacaagcctcctcaattggaagggctttatcaatatctttcaacagtatttgcaact
gatttacattctcgcgcatttttaaggcttcctaaatctgtgggtgtggattttcgtgca
tcgtgcttctgccataagcgaacaattgacatgggcttcgtatgttctgtatgcttgtcc
attttctgtgagcatcatgataagtgttcaacctgtgggtctgtatttggtcaagctcaa
ctagatgcttcagcagccaacaggaaaagaaaggcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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