KEGG   Vigna radiata (mung bean): 106775816
Entry
106775816         CDS       T04126                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
vra  Vigna radiata (mung bean)
Pathway
vra03013  Nucleocytoplasmic transport
vra03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vra00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    106775816
   03015 mRNA surveillance pathway
    106775816
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vra03019]
    106775816
Messenger RNA biogenesis [BR:vra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     106775816
   mRNA cycle factors
    P-body specific factors
     106775816
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 106775816
NCBI-ProteinID: XP_014518504
UniProt: A0A1S3VK86
Position
10:complement(20812293..20820767)
AA seq 512 aa
MKGALDRTKAVLRHLPPSLSEAALLAQIDAAFADRYNWFSFLPGKISQKHISYSRAYIDF
KRPDDVILFAEFFNGHVFVNEKGSQFKVIVEYAPSQRVPRQWSKKDGRDGTIYRDSEYLE
FLELLSKPVENLPSAEIQLEKREAERSGAAKDIPISTPLMDFVRQKRAAKGPRRSLSNGK
VSRRGTSSNGSPSSGTSRRGSGKKRVSATMYVARHPGKNATMKDRSIYTLAPSQGDQHIS
SKASNVASSDGKQTLDENGVSGNNDAGKKKVLLLKGKEREIIAVSDLDSMSQHHNVTSSA
KEIVGATVLKQNQRHEGSGRIIRSILSKKELRQSQSSRALSEHQIQTSNLEKEKQSPRPV
HVQLILKGMNGTSENKIGLHDSHASSERQERHTRHKDRPDRGVWTSSNVADESVSSAASS
QVDPVEGRNADLKHDMPNARSGEVKSLGGVRTSHSSENGFNKHFGRRGPTHGLKDVDSYS
VSSEGKHPRRSGTTTYGSNEKQVWVQKASSGT
NT seq 1539 nt   +upstreamnt  +downstreamnt
atgaagggtgcgttggatcggacgaaggcggtgctgcgtcacttgccgccctctctttcc
gaggccgcacttttggcccaaattgatgccgccttcgctgaccgctacaactggttctct
ttccttcctggcaaaatcagccagaaacatatatcatattctagagcctacatcgacttc
aagaggccagatgacgttatactgtttgcagagttcttcaatggacacgtctttgtgaat
gaaaagggatctcagttcaaagttattgttgaatatgctccttcccaacgcgttccaaga
cagtggtctaaaaaggatggtcgtgatgggaccatatatagagattctgagtatctggag
tttcttgaactactttccaagcctgttgagaatcttcccagcgctgagatacaattggag
aagagagaagcagaacgatctggtgctgcaaaagatattcctataagtacaccactgatg
gattttgtgcgccagaaaagagctgccaagggacctcggaggtcgttatccaatggcaaa
gtgagtagaagaggcacttcatcaaatgggagtcctagttctggcacatcaagacgaggt
tcaggaaagaagagggtttctgctactatgtatgttgccaggcacccagggaaaaatgct
actatgaaagacagatcgatttatactttggctcctagccaaggtgatcagcatatttca
agtaaagcttcaaacgtggcctcttcagatggaaaacaaacccttgatgagaatggagtt
tctggaaataatgatgctggaaaaaaaaaagtactgcttcttaaagggaaagaaagagaa
attattgctgtatccgatttagatagcatgtcacagcatcacaatgtaacatcttcagcc
aaagaaattgttggtgcaacagttttgaagcagaatcagaggcatgaaggtagtggaagg
attataagaagcatactttcaaaaaaggagttgcgtcaaagccaatcttccagggcactc
tctgagcatcaaatccaaacatctaatctagaaaaagaaaaacaatcccctcggcccgta
catgtgcaactaattctgaagggcatgaatggtacatcagagaataagattggtctgcat
gattcacatgcatctagcgagaggcaggagagacatactagacataaagatagaccagat
cgtggtgtttggacaagttccaatgttgctgatgagtctgtctcatctgctgcttcctca
caagtagatcctgttgaaggaagaaatgctgatttaaaacatgacatgccaaatgcaaga
agtggggaggtaaaatctcttggaggtgtccgtaccagtcattcatcagaaaatggcttc
aataagcattttggtcgccgtggaccaacacatgggttaaaggatgttgatagctattca
gtttcaagtgaagggaagcatcctagaagatctggtaccactacttatggttccaacgag
aaacaagtttgggttcaaaaagcgagttctggtacctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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