KEGG   Vigna radiata (mung bean): 106777530
Entry
106777530         CDS       T04126                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
vra  Vigna radiata (mung bean)
Pathway
vra03020  RNA polymerase
vra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106777530
  09124 Replication and repair
   03420 Nucleotide excision repair
    106777530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vra03021]
    106777530
   03400 DNA repair and recombination proteins [BR:vra03400]
    106777530
Enzymes [BR:vra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106777530
Transcription machinery [BR:vra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     106777530
DNA repair and recombination proteins [BR:vra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      106777530
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R MIF4G_like_2 DUF5938
Other DBs
NCBI-GeneID: 106777530
NCBI-ProteinID: XP_014520599
UniProt: A0A1S3VRA4
Position
11:6763293..6773056
AA seq 1841 aa
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK
FKLALRIRNPKNRLKKILDACKNKGKCEGGDEIDIPGQNTDEPVKKSRGGCGAQQPKITI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS
LLGCRKITKRDTFIPKDVFMNILMWWEDFDGKVPTPAILKPEPLWTGKQVFNLIIPKPIN
LIRYSSWHSENERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQHAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL
EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ
LATEIAPSGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN
ADVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYFEMPDEEV
ALDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFGQDLTCIFNDDNAEKLILRIRIM
NDESPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKTQKFDESEGFKP
NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPASPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPTYSPTSPSYSPTSPSYSPSSPTYSPSSPFNSSGSPDY
SPSSPQYSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDRGTR
NT seq 5526 nt   +upstreamnt  +downstreamnt
atggatattcgatttccgttctctccggcggaggtcgccaaagtccggatggttcagttc
ggaatactcagtcccgatgagatcagacaaatgtctgtggtgcaaattgagcacggtgag
actacggagagagggaagccgaaggttggaggattgagtgaccctcgacttggaactatt
gacagaaagctcaagtgtgagacttgcacggcgagtatggctgaatgtcctggccacttt
ggacacttggagcttgctaagccaatgtttcacattgggtttttaaagacagtgttgact
ataatgcgttgtgtttgcttcaactgctctaaaattctagctgacgagaatgatcacaaa
tttaagctagctttgaggatcaggaatcccaagaacaggctgaaaaagattctggatgct
tgcaaaaacaaaggcaagtgtgaagggggagatgaaattgatattcctggacaaaatact
gatgaaccagttaaaaagagtcgcggtggctgtggtgctcagcaaccaaagattacgatt
gaagggatgaaaatgattgcagagtacaaagctcaaaggaagaaaagtgatgaccaagaa
cagcttcctgaacctgtagagaggaaacaaaccctttctgcagaaagggttcttggtgtt
ctgaaaaggataagcgacgaggactgtcagttgttgggcttgaaccctaagtatgcccgt
cctgactggatgattttacaagttcttccaattcctcctccacctgtgagaccttctgtg
atgatggacacatcctctaggagtgaggatgatttaactcatcagctggctatgatcatc
aggcacaatgagaatcttaagagacaggagaggaacggatctcctgcacatattatttct
gagtttgctcaattattgcagttccacatagcaacatattttgataatgagttgcctgga
ctgccaagggctactcaaagatccggaaggcctatcaaatcaatatgtagcaggctcaag
gcaaaagaaggacggattagaggtaacttgatgggtaaaagagttgatttttcagctcga
acagtcattacacctgatccaacaatcaacattgatcaattgggagtgccgtggagtatt
gctttgaatctaacataccctgagaccgtgactccatacaacattgaaaggttgaaggaa
cttgttgagtatggaccccatcctccacctggaaaaactggtgccaagtacatcattcgt
gatgatggacaaaggctcgatctcagatatttaaagaaaagtagtgatcaccatttggag
cttggctacaaggttgagcgtcatttgaatgatggagactttgttctcttcaaccgtcag
cctagtcttcataaaatgtccatcatggggcatagaatcaaaatcatgccatattctaca
ttccggcttaacttgtctgtaacttcaccatataatgctgattttgatggggatgaaatg
aatatgcatgttcctcagtcttttgaaaccagagctgaggtgttggagcttatgatggtg
cctaaatgcattgtgtcaccacagtcaaacaggccagtgatgggaattgtccaagattca
cttttaggatgcagaaaaatcactaagagggatacttttatcccaaaggatgttttcatg
aacatattgatgtggtgggaagattttgatgggaaagttcctactcctgcaatattgaag
ccagaaccgttatggacagggaaacaagttttcaatctcatcattcctaagcctataaac
ctaatcagatattctagttggcacagtgagaatgaaaggggatccataacccctggggat
accatggtcagaattgagaaaggtgaactacttactggaacactttgcaaaaagacactt
ggaacatctactggaagtctcattcacgtgatttgggaagaggttggccctgatgcagct
cggaaatttcttgggcatactcagtggcttgtaaactactggcttttgcagcatgctttt
agcattggaattggtgatacaattgctgatgcttccactatggaaaccataaatcagact
atatcagcagctaaggagaaagtgaaacaacttatcagggatgcccaagagaaaaagttg
gaggctgagcctggtcggacaatgatggattcatttgaaaacagagtgaatcagacacta
aatagagctcgtgatgatgctggaaatagtgctcaaaaaagtttatctgagagcaacaat
ctgaaagctatggtgacagctggttccaaaggaagttttatcaacatatctcaaatgact
gcttgtgtgggtcaacagaacgttgaaggtaaacgaattccatatgggttcatagatagg
acattgcctcatttcacaaaagatgattatgggcctgaaagtcgtggctttgtggagaac
tcatatctgcgaggattgacccctcaagagttcttttttcatgccatgggtggtagggaa
ggtcttattgatactgccgtgaagacctctgaaactgggtacatccagaggcgactggtg
aaggctatggaggacatcatggttaaatatgatgggactgttagaaattctttgggagac
gtcatacagtttctttatggggaagatggtatggatgcggtttggattgaaacacagaag
ctggattcccttaaaatgaaaaagacagaatttgatagggtgtttaggtatgaatttgat
gatgaaaactggaagcctacctacatgcttgaagagcctgtagaagacttaaaaaccatc
cgagaatttcgtaatgtgtttgaagctgaggttcagaaactcgaagctgatagatatcaa
cttgcaactgagatagcccctagtggtgacagttctctcccactacctgttaacttgaag
aggcttatctggaatgctcagaagacatttaaggttgatttccgaaggccttctgatatg
catccaatggaaattgtggaagccattgataagctgcaggagcggcttaaggttgttcct
ggtgaagatcttttaagtcaagaagctcaaaagaatgctactctcctgtttaacattctt
cttcgcagcactttcgcaagtaaaagggtcttggaggaatacaggctttctcgagaggca
tttgagtgggtagtgggagaaatagaatcaaggttcttgcagtcactcgtagcctctgga
gaaatgattggttgtgtagctgcccaatcaattggtgaacctgctactcagatgactctt
aacactttccattatgctggtgtcagtgcaaagaatgttactcttggtgttcctaggtta
agggaaatcattaatgtggcaaagagaattaaaacaccttctctgtctgtgtacttgaat
gctgatgttggtaagactaaagagagagccaagagcgtgcagtgtgctttagaatatacc
actctaaggagtgtgactcaagctacagaggtgtggtatgatccggatccgatgagtaca
ataattgaagaggatgttgatttcgtgaagtcctactttgaaatgcccgatgaagaagtt
gcccttgacaaaatctccccttggttgcttcgcatagagctgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcagagaagattaatcttgaatttggtcaggat
ttgacttgtatatttaatgatgataatgctgaaaaacttatacttcgtatcagaattatg
aacgatgaatcacccaagggtgagattcaggatgaatctgctgaagatgatgttttctta
aagaaaatagaaagcaacatgctgactgaaatgaccttacgtggtatccctgacatcaac
aaagtttttataaagaatactaaaacccagaagtttgatgagagtgaaggttttaagcct
aatgaggaatggatgcttgatactgaaggtgtcaaccttctggctgtgatgtgccatgaa
gatgttgatgcgaccaggaccacaagcaatcacttaattgaagttattgaagttcttggt
attgaggcagttcggcgagctcttttggatgaattgcgtgttgtcatttcgtttgatggt
tcctatgtcaattacaggcatttggctattctttgtgatacaatgacttatcgggggcat
ctgatggccattacacgtcatggtatcaaccggaatgatactgggccaatgatgagatgc
tcatttgaagagacagttgatattctgcttgatgctgcagtatatgctgagactgattac
ttgaggggtgtcactgaaaacattatgctaggtcagcttgcccctattggcacaggtgaa
tgtgcattgtatcttaatgatgagatgctgaagaatgccattgagctccaactgcctagt
tatatggacggtcttgattttggcatgactcctgctcgctctccaatatctggaactcca
tatcatgaaggcttgatgtctcctagttatttgttgagtccaaatttgcgtctgtctcct
acgtcggatgcccagttttcaccttatgttggtgggatggcgttttctcccacctcatct
cctgggtacagtccatcctctccaggctatagtccatcatcgcctgggtacagccccaca
tcacctgggtacagtcccacatctcccggctacagtcccacatcaccaggttacagtccg
acctctcccacatatagccctagttctccaggatatagtcctacaagtccggcttattca
ccaaccagtccatcctactctcccacatcacccagctatagcccaacatcacccagctac
agtcctacatcacccagctacagccccacatcacccagttatagcccgacttctcccagc
tacagcccgacttcacctgcatacagcccaacttcacctgcctatagccccacttcacct
gcttacagtcccacttcaccttcatacagtcctacgtcaccttcatacagccccacttca
ccctcttacagccctacctccccatcatatagccctgcttcccctgcttacagccccact
tcacctggatacagccctacgtcaccctcatatagcccaacatccccatcgtatagtcct
acttccccatcgtatagtcctacttcccctagttacaatccccagtcagcaaagtacagt
ccttcgttagcatattctccaagcagtccaagattgtctccatcaagtccatatagtccc
acatccccaacctacagccccacgtccccatcatattcaccgacatcaccgtcttattca
ccatcaagcccaacatacagtcccagcagcccatttaattctagtgggagcccagactat
agcccaagttcaccccaatatagtcccagtacgggttactcaccaagtcaacctggttac
tcaccatcgtcaaccagccagtacactcctcaaactagtgacaaggatgatagaggcact
cgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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