KEGG   Veillonella rodentium: 44547418_01439
Entry
44547418_01439    CDS       T05216                                 
Symbol
hupA
Name
(GenBank) HB
  KO
K03530  DNA-binding protein HU-beta
Organism
vrm  Veillonella rodentium
Brite
KEGG Orthology (KO) [BR:vrm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vrm03032]
    44547418_01439 (hupA)
   03036 Chromosome and associated proteins [BR:vrm03036]
    44547418_01439 (hupA)
   03400 DNA repair and recombination proteins [BR:vrm03400]
    44547418_01439 (hupA)
DNA replication proteins [BR:vrm03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    44547418_01439 (hupA)
Chromosome and associated proteins [BR:vrm03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    44547418_01439 (hupA)
DNA repair and recombination proteins [BR:vrm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      44547418_01439 (hupA)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG DUF2267 HU-CCDC81_euk_2 HU-CCDC81_bac_2 HU-DNA_bdg HU-CCDC81_euk_1
Other DBs
NCBI-ProteinID: SNV71453
UniProt: A0A239ZKQ0
Position
1:complement(1541398..1541697)
AA seq 99 aa
MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG
RNPQNGKTIRIAASKSPAFKAGKGLKEQVNAAKAKKRKK
NT seq 300 nt   +upstreamnt  +downstreamnt
atgaataaaacagaattaatcgcaagtgttgcacaaaaaactgagttaacaaaaaaagac
gctgaaaaagcagttaaagctgtattcgatacagttgctgaagaattagctgctggtggt
aaagtacaagttatcggcttcggtactttcgaagttcgtgaacgcgcagctcgtgaaggc
cgcaacccacaaaacggcaaaactatccgtatcgcagcttccaaatctcctgcattcaaa
gctggtaaaggtttgaaagaacaagttaacgctgcaaaagctaaaaaacgcaaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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