KEGG   Vibrio rotiferianus: BSZ04_10700
Entry
BSZ04_10700       CDS       T05115                                 
Name
(GenBank) RNA polymerase sigma factor RpoS
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
vro  Vibrio rotiferianus
Pathway
vro05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vro00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    BSZ04_10700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vro03021]
    BSZ04_10700
Transcription machinery [BR:vro03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BSZ04_10700
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_20
Other DBs
NCBI-ProteinID: ASI95481
UniProt: A0A2K7SP11
Position
2:363992..364978
AA seq 328 aa
MSISNTVTKVEEFDYDDAAVGRINNELVKSPSKKEKSSQREEFDASNKSLDATQLYLGEI
GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNL
GLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTAREL
SQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQI
QVEGLRRLREILIKQGLNMENLFNVEDD
NT seq 987 nt   +upstreamnt  +downstreamnt
atgagtatcagcaacacagtaaccaaagttgaagagtttgattatgacgatgcagcagta
ggccgcattaataacgaacttgtaaaatcaccatccaaaaaagagaagagctcgcaaaga
gaggaattcgatgcgagtaataagagcttagatgcaacacagctttatctaggtgaaatt
ggcttctcacctctactcacagcagaagaagaagtactttatgctcgacgtgcattgcgt
ggcgatgaagctgctcgtaaacgtatgatcgaaagtaacttgcgtctggtagtgaagatc
tctcgccgctacagcaatcgtggtcttgcacttcttgatctcatcgaagaaggcaaccta
ggtttgatccgtgcggtagagaaatttgatccagaaagaggcttccgtttctcaacttac
gcaacgtggtggatccgccaaacgatcgagcgtgcgttgatgaaccaaactcgtaccatc
cgtctgccaattcatgtggttaaagagctgaacatttatctgcgtaccgcgcgtgaactt
tctcagaagctcgatcatgaaccaacagcagaagagattgctgcacagctagatatcccg
gtagaagacgtaagcaaaatgcttcgccttaacgagcgtattagttctgttgatacacca
attggtggtgacggcgagaaagcgctgctggatattattcctgatgccaacaattcagac
cctgaagtttccactcaggacgacgacattaaatcttcattgatccattggttagaagag
ctgaatccaaaacagaaagaagtgcttgcacgtcggtttggtctgcttggctatgagcca
tcaacacttgaagaagtgggacgtgagattggtctaacacgcgaacgtgttcgtcagatc
caagtggaaggcttacgtcgactacgtgagatcttgattaaacaaggtctgaacatggaa
aacttgttcaacgtagaagatgattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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