KEGG   Vibrio rotiferianus: BSZ04_11995
Entry
BSZ04_11995       CDS       T05115                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
vro  Vibrio rotiferianus
Pathway
vro03030  DNA replication
vro03430  Mismatch repair
vro03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BSZ04_11995
   03430 Mismatch repair
    BSZ04_11995
   03440 Homologous recombination
    BSZ04_11995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vro03032]
    BSZ04_11995
   03400 DNA repair and recombination proteins [BR:vro03400]
    BSZ04_11995
Enzymes [BR:vro01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BSZ04_11995
DNA replication proteins [BR:vro03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BSZ04_11995
DNA repair and recombination proteins [BR:vro03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BSZ04_11995
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2 Imm64
Other DBs
NCBI-ProteinID: ASI95715
Position
2:656550..660029
AA seq 1159 aa
MSDPKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGN
GVKPIIGADFKMQSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVIDKAW
LAELSEGLIVLSGAKNGEIGKALLKGNRKVVESCVAFYQEYFPDRFYLELVRTGRSDEET
YLHFAVELAEETQLPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVMKSREGL
EERLEFLFPDEAERKERRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQIESIPLVDPASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALMA
SLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEGERETLGLY
LTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDAQQVNDKFFEQFTRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDDLKQLLGKGQVELEFN
NT seq 3480 nt   +upstreamnt  +downstreamnt
atgtcagatcccaagttcattcacctaagaatccacagtgatttctctatggtggatggt
atcaacaaagttccaccgctcgttaagaaagtcgccgaactcggcatgcctgcaatggca
ttgaccgatttcactaacctatgtggtttggtgaagtactacggcactgcgcacggcaat
ggtgtgaagccaatcatcggtgctgatttcaaaatgcaatcggatgagtttggcgaggag
ctgacgcaattaacgctactagcagcaaacaatgaaggttacaaaaaccttacgttgctg
atttcaaaagcttaccttcgtggtcacgtacagcatcaaccagttatcgataaagcttgg
ttggcagagttgtcagaaggcttgattgtgctttctggtgcaaaaaacggtgaaatcggt
aaagcgttacttaaaggtaaccgcaaagtggtggaaagctgtgtggctttttaccaagag
tatttcccagatcgtttctatctagaactggttcgtactggtcgttcagacgaagaaacg
tacctgcattttgccgttgaattagcagaagaaactcaactaccggttgtagcgaccaac
gaagtcgttttcatcagtgaagacctatttgacgcgcacgaaatccgtgtggcgattcac
gatggttacacgctagaagatccgcgtcgtccaaagaactatagtccagaacagtattta
cgtactgaagaggaaatgtgtgagctgtttgccgacattcctgaagcgctggaaaacagt
gtcgaaattgctaaacgctgtaacgtgacggtacgtcttggcgaatacttcctacctgcc
ttcccaaccgaagggatggaagaaaccgaattcttggtaatgaaatcccgtgaaggcttg
gaagagcgtcttgaattcttattcccagacgaagctgagcgtaaagaacgtcgaccagaa
tacgatgaccgcctgcaaatcgaactcgatgtaatcaaccaaatgggattccctggttac
ttcttgatcgtaatggagtttatccagtggtcgaaagacaacgcgattccggtggggccg
ggtcgtggttcgggtgccggttctttggtggcatacgcactaaaaatcaccgaccttgac
ccactggaatatgaccttcttttcgaacgtttcttgaacccagaacgtgtctccatgccc
gatttcgatgtcgacttctgtatggataagcgtgatcaagtaattgaccacgttgcggaa
atgtatggtcgtgatgcggtatcgcagatcatcactttcggtaccatggcagcaaaagcg
gtaattcgagatgttggccgtgtacttggccatccatttggtttcgttgatcgtatttcc
aaattggttccgcctgacccaggcatgacgctagagaaagcgtttaaagctgaacctgca
ttgccagaactttacgacgccgatgaagaagtaaaagagctgatcgacaagtgtcgtatc
cttgaaggttgtacacgaaatgccggtaagcacgcgggtggtgttgtaatctcgccaacc
acgatcacagactttgcaccgatttatgccgatgctgaaggccacttcccggtgacacag
ttcgataagaacgacgtagaaaccgcgggtctggttaagtttgacttcttggggctacgt
accctaactattatcgattgggcattgggactgattaacccgcgactagagcgtgaaggt
aaagagccagttcagatcgagtctatcccattggtggacccggcatctttccgactgttg
caaaactctgaaaccaccgcggtattccagcttgaatcacgcggtatgaaagagctaatc
aaacgtctgcaaccagactgtttcgaagatatcatcgcattggttgcccttttccgccct
ggcccgctacagtcgggcatggtagataactttatcgaccgtaagcacggccgagaagcg
atctcttatcctgatgaaaagtggcaacatgaatcgctaaaagaaattctcgatccaact
tacggcatcattctgtatcaggaacaggtaatgcagatcgcacaggtactgtctggctac
acccttggtggtgcggacatgcttcgtcgtgcgatgggtaagaaaaagccggaagagatg
gcgaagcagcgtgctaccttcgaagagggcgcggttgctaacggcgtcgatggcgaattg
gcgatgaagatcttcgacttggtagaaaagttcgcgggttacggctttaacaaatcacac
tcggctgcctatgcgttggtttcttaccaaacgttatggttaaaaacgcactatcctgca
gaatttatggcagcggtaatgaccgccgatatggataacaccgaaaaggtcgttggtctt
gtggacgagtgtttccgcatgaaactgacagtcttgccacctgatattaactcgggcttg
tatcgctttaacgtggatgaaaatggcgcgattgtttatggtatcggtgcgataaaaggc
gtgggtgaaggccccattgatgcgatattagaagcgcgtaataaaggcggtcacttcatc
gacttatttgacttctgtgcacgtatcgatctgaaaaaggtcaacaaacgtgttatcgaa
aaactgatttatgctggagcgctagataggctaggcccacaccgagcagcgttgatggcc
tcgctcaatgacgcagtaaaagcggcaagccaacaccaccaagctgaagcatttggtcaa
accgacatgttcggtgtactgactgatgcgccggaagaagtagagcataaatatactcag
gtgccagcttggcctgagaaagtatggttagagggtgaacgtgagacgctcggtttatat
ttgaccgggcacccagttaacgcatacataaaggaactaaataagtacgttagttgtcga
ctaaaagacgccactccaactcgccgtgatcaatccgtgaccgtggcgggcttggtaatt
gcagctcgcgtaatgacaactaaacgtggtacgcgcatcggtttgatgactttggatgat
cgaagtggtcgaatggaggtgatgttgttctcagatgcgcttgatagatatgcggaactt
ctcgaaaaagataaaattttggtcgtttctggacaggtcagctttgatgacttcaatggt
ggccttaaaatgtcggcgcgtgaagttatggatctcggcagtgctcgtgaaaagtatgca
cgaggtttgtcagtatcaattgatgctcaacaggtaaatgacaaattctttgagcaattt
actcgtattctagagccacataaagccgggaccgtacctgtcaatgtatactatcagcgt
gccgacgccagagcgcggttaactttgggcaccgaatggcgagtaacgccaagtgataca
ttactcgatgatttaaaacagttgcttggcaaaggccaggtagaactcgaatttaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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