KEGG   Aliivibrio salmonicida: VSAL_I1680
Entry
VSAL_I1680        CDS       T00782                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
vsa  Aliivibrio salmonicida
Pathway
vsa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    VSAL_I1680 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vsa03400]
    VSAL_I1680 (sbcB)
Enzymes [BR:vsa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     VSAL_I1680 (sbcB)
DNA repair and recombination proteins [BR:vsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     VSAL_I1680 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     VSAL_I1680 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      VSAL_I1680 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: CAQ79365
UniProt: B6EMI0
Position
1:1775608..1777032
AA seq 474 aa
MPQDNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPE
ACLITGITPQMAVSKGLSEPEFIAQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFE
PYGWSWQNGNSRWDLLDVMRAVYALRPEGIEWPKDEEGKPSFRLEKLSQANGIEHENAHD
AMADVIATIELAKVVKKAQPKMFNYLLSMRHKKKAATLIDIIEMTPLMHVSGMFGVDRGN
ISWIVPVAWHPTNNNAVITIDLALDPAVFLELDAEQLHQRMYTKRSELGPDELPVPVKLV
HLNKCPILAPAKTLTAENAIALNVDREACLRNLKVIRENPEIRQKLIDLYNIEPGYEKSS
NVDTLLYDGFFSHADKTAIDMIRQSTPEQLIDFEPNVSDPRIKPLLFRYRARNFPHTLNE
SEQLRWQAHLQDYFETHMSDYETRFESLYLESEGNEKKTAILRAVYNYVQQLVS
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgccgcaggataacgcaccaagtttcttcttctttgattatgaaacatggggaacaagt
ccctctttagatcgcccttgccaatttgcaggtgtgcgaaccgatgaagactttaatatt
attggtgagccattagtcatttattgtcgccctcctatcgattacttaccttctcctgaa
gcgtgtttgattactggcattactccgcaaatggcggtcagtaaaggtctgtctgagcct
gagtttattgctcaaatccataacgagctatcaaaaccaaacacctgttctttaggttat
aacaacattcgttttgatgatgaagtttctcgctacaccttatatcgcaacttcttcgaa
ccgtatggttggagctggcaaaatggtaattcacgctgggatttacttgatgtgatgcgt
gctgtttatgcgctacgtcctgaaggtattgaatggccaaaagacgaagaaggcaagcca
agctttagattagaaaaactctctcaagcaaacggcattgagcatgaaaacgcccatgat
gcgatggccgatgttattgcgacaattgagctcgctaaagttgtgaaaaaagcacagcct
aaaatgtttaactacctactttctatgcgccataaaaagaaagcggcgacattaatcgac
attattgaaatgacgccattgatgcacgtatctggtatgttcggcgtcgatagaggaaac
atcagttggattgtgcctgttgcttggcatccaaccaacaacaatgcggtgatcacgatt
gatttagcgttagaccctgcggtttttcttgagctagatgcagaacaattacaccaacgt
atgtataccaagcgttctgaattgggtcctgatgaattaccggtccctgttaagcttgtt
catcttaacaaatgccctattcttgccccagcaaaaacgttaacggctgaaaatgctatc
gcgcttaatgttgatcgtgaagcgtgtttgcgaaacttgaaagtgattcgtgaaaaccca
gaaattcgccaaaagttgatcgacttatacaatattgaacctggctatgagaaatcgtca
aatgtagatactttactttatgatggctttttctctcatgcagataaaacagccattgat
atgatccgtcaatcaacgcctgaacagcttattgattttgaaccgaatgtgagtgatcct
cgtatcaagccattattgttccgctatcgtgctcgtaacttcccgcacacgttaaatgaa
tcagaacaactacgttggcaagcgcatctacaagattattttgagacgcacatgtctgat
tacgaaacacgctttgaaagcttataccttgagtctgaaggtaatgagaaaaagactgcg
attcttcgcgccgtttataattacgtacaacagttagtatcatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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