KEGG   Aliivibrio salmonicida: VSAL_I2866
Entry
VSAL_I2866        CDS       T00782                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta-subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
vsa  Aliivibrio salmonicida
Pathway
vsa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VSAL_I2866 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vsa03021]
    VSAL_I2866 (rpoB)
   03400 DNA repair and recombination proteins [BR:vsa03400]
    VSAL_I2866 (rpoB)
Enzymes [BR:vsa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VSAL_I2866 (rpoB)
Transcription machinery [BR:vsa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VSAL_I2866 (rpoB)
DNA repair and recombination proteins [BR:vsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VSAL_I2866 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 FapA
Other DBs
NCBI-ProteinID: CAQ80550
UniProt: B6ENR3
Position
1:complement(3104688..3108716)
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFTKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRVKLRLVVYDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALRKTTEEILDLFFDKVVFEVKDQTLMME
LLPERLRGETATFDIESNGKVYVEAGRRITARHIRQLTKDEVNNIEVPVDYIVGKVASHD
YVNEDTGEIIIAANQEFSLEDLANLSQAGHKKIEVLFTNDLDHGAYISDTLRADSTVDRL
SALVEVYRMMRPGEPPTKEAAESLFESLFFSEDRYDLSTVGRMKFNSSIGRDNGEGAGIL
DETDIIEVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAYARCNEYGFLETPYRRVVDNIVT
EDVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIARQKGESGLHPREHIQYMDVATNQV
VSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERCVAIDSGVTAVAKR
GGMVQSVDASRIVIKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVTRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDI
TEEFQILEGGLLARVRTLLTLAGTSEVKLDAMDRKQWLEITLDDESQQNQLEQLAEQYDE
LKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMGLAAKGVGDKLNQMLKEQQELHK
FRNFLQKVYDLGETRQEVDIAALSDDEVRTLVKNLRGGLPIATPIFDGAPESSIKELLKL
VDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttatacagagaaaaagcgcatccgtaaggattttggtaagcgtccacaa
gtgttggacataccatacttactatcgatccagcttgattcttttactaaatttatcgag
caagatcctgaagggcaatacggtcttgaggctgctttccgttctgtttttccaattcag
agctacaatggcaactctaagctagaatacgttagctataatctccgtgagccagaattt
gatgttaaagaatgtcaaatccgcggtgttacctattctgcacctttacgcgttaaatta
cgtttagttgtgtacgataaagatgcacctgcaggcacggtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgactgacaacggtacttttgtaatcaatggt
actgaaagggttatcgtatcccagctgcaccgcagcccaggtgtcttcttcgacagcgat
aagggtaaaacccattcatctggtaaagttctttataacgcgcgtgtaattccttaccgt
ggttcatggttagatttcgaatttgatcctaaggataacttattcgtacgtatcgaccgt
cgtcgtaaattaccagcaacgatcatcttacgtgcacttcgtaaaacaacagaagaaatc
ttagatctattcttcgataaagttgtatttgaagtgaaagaccaaacgttaatgatggaa
ttacttcctgaacgtttacgtggtgagactgcaacatttgatattgaatcgaacggcaaa
gtttatgttgaagccggtcgtcgtattactgcgcgtcatattcgtcaattgacgaaagac
gaagtaaataatatcgaagtaccagtagattatatcgtaggtaaagtggcttctcacgat
tatgtgaatgaagacactggtgagatcattatcgcggctaaccaagagtttagcttagaa
gatcttgctaatttatctcaagctggccacaaaaagattgaagtgttatttacgaatgac
cttgatcatggtgcatacatctctgacacattacgtgcagattcaactgttgaccgttta
tcggcacttgttgaagtttatcgtatgatgcgcccaggcgagccaccaacaaaagaagct
gctgaatcattatttgaaagcctattcttctctgaagatcgttatgacttatcgactgtt
ggtcgtatgaagttcaatagctcaattggtcgtgataatggtgaaggcgcaggcatcctt
gatgaaacagacatcatcgaagttatgcgtaaactgatcgatattcgtaacggtaaaggc
gaggttgatgatatcgatcaccttggtaaccgtcgtattcgttctgttggcgaaatggca
gaaaaccaattccgtgttggtttagttcgtgtagaacgtgctgttcgtgaacgtctaagt
cttggtgatcttgatgcaattatgcctcaagatcttatcaacgctaagccgatttcagct
gcagttaaagaattctttggctcttcacagctgtctcagtttatggatcagaataaccca
ttgtcagaagttacgcacaaacgtcgtatttctgctttagggcctggcggtctaactcgt
gagcgtgctggtttcgaagttcgtgatgtacacgcgactcactacggtcgcctatgtcca
atcgaaactcctgaaggaccaaacatcggtctaattaactcattatcagcgtatgctcga
tgtaatgaatatggtttcctagagactccatatcgtcgtgttgttgataatatcgtgact
gaagatgtagattacctatctgcgattgaagaaggtacatttgttattgcacaggcgaat
gccgtgttaacagaagaaggtactttcgctgatgaattaatcatcgctcgtcagaaaggt
gaatcaggcctacatccacgtgaacacatccaatatatggatgtcgcgacaaaccaagtt
gtatctgtagctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcccta
atgggtgcgaacatgcagcgtcaagctgtacctacattaagagctgataagcctttagtt
ggtactggtattgagcgttgtgtagcaatcgattcaggtgtaaccgctgttgctaaacgt
ggcggtatggttcagtcagtagatgcttctcgtatcgttatcaaagtgaacgaagaagaa
ttggtacctggcgaagctggtatcgatatctacaacttaactaaatacactcgttctaac
caaaatacgtgtatcaaccaacgtccaacagtgcttcctggtgaacctgttactcgtggt
gatgttcttgctgatggtccgtcaacggatcttggtgagcttgcacttggtcagaacatg
cgtatcgcatttatgccttggaatggttataacttcgaggattcaatccttgtatctgag
cgtgtagttcaggaagaccgtttcacgacgattcacattcaagaactatcttgtgtggct
cgtgatactaaacttggctctgaagagatcactgcagatatccctaacgtaggcgaagct
gctctgtctaaacttgatgaatcaggtattgtttatatcggtgctgaagttaagggtgga
gacatcttagttggtaaagtaacacctaaaggtgaaactcaactgactccagaagagaag
ctactacgagctatctttggtgaaaaagcatcagatgttaaagattcttctctacgtgta
ccaaactctgtttcaggtactatcattgacgtacaagtatttacgcgtgatggtgttgaa
aaagataaacgtgctctagaaatcgaacaaatgcagcttaaagaagctaagaaagacatc
actgaagaattccagattcttgaaggtggcttattagcacgtgttcgcacacttctaacg
cttgcaggtacttctgaagttaaacttgatgcgatggatcgtaagcagtggttagaaatc
acgcttgatgatgaatcacaacaaaatcaacttgagcagcttgctgagcaatatgatgaa
cttaaagctgagttcgataagaaattcgaaactaaacgtcgtaagatcactcaaggtgat
gatcttgcaccaggcgtactgaaaatcgttaaagtttacctagcggtaaaacgtcgtatt
cagcctggtgataagatggcgggtcgtcatggtaacaagggtgtaatctctaagattaac
cctgttgaagacatgccttatgatgaaaaaggtcagccagtagatatcgttctgaaccca
ctgggtgtaccttctcgtatgaacatcggtcaaattcttgaagttcatatgggtcttgct
gcgaaaggtgttggtgataaacttaaccaaatgcttaaagagcaacaagaactgcataag
ttccgtaacttcttacaaaaagtatacgatcttggtgaaactcgccaagaagtagacatc
gctgcactgtctgatgacgaagttcgtacattagttaagaacttacgcggtggtttacca
atcgcaacaccaatctttgatggtgctccagaatcatcaattaaagaactattaaaactt
gttgatctgccagaatctggtcagttgaaattgtttgatggtcgtactggtgatgcgttt
gagcgtcctgtaactgttggttacatgtatatgctaaaactaaaccacttagtcgatgac
aagatgcacgcacgttctaccggctcttacagccttgtaactcagcagccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcacttgaagcatat
ggtgctgcatatactctacaagaaatgctaacagttaagtcggatgacgtgaacggtcgt
actaagatgtataaaaacatcgtagatggcgatcatcgtatggaaccaggtatgccagaa
tcattcaacgtattgttgaaagagatccgctcacttggtatcaacatcgagttagaagac
gaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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