KEGG   Vibrio mediterranei: BSZ05_00435
Entry
BSZ05_00435       CDS       T04936                                 
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
vsh  Vibrio mediterranei
Pathway
vsh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BSZ05_00435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vsh03400]
    BSZ05_00435
DNA repair and recombination proteins [BR:vsh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BSZ05_00435
SSDB
Motif
Pfam: UvrC_RNaseH_dom HHH_5 GIY-YIG UVR HHH HHH_2 HHH_3 YtxC GIY_YIG_domain 5_3_exonuc
Other DBs
NCBI-ProteinID: ASI88396
Position
1:complement(92281..94116)
AA seq 611 aa
MSEHIFDSTSFLKTVTNQPGVYRMYDAESVVIYVGKAKDLKKRLTSYFRKRVDSEKTRAL
VSNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSGHKHPRLSMHR
GARRKKGEYFGPYPDSGAVRQTLHLLQKIFPVRQCEDSVYANRSRPCLMYQIGRCAGPCV
SSIISDEEYAELVGLLRLFLQGKDSNVLQMLVEKMDEASRNLKFEDAAKYRDQIQAIRRV
QEQQFVSEDSDDDMDVLGFAQEKGVACVHILMIRQGKVLGSRSHFPKIPSNTDRKEVFYS
FLSQYYLNQTESRTIPTRIILNDDLVEDISTLGEALSDIAGRKVIFHVNPTGSRGRYLKL
SNTNALTAITTKINHKMTINQRFKALQEELELESITRMECFDISHTMGESTIASCVVFNQ
EGPLKQEYRRYNITGITGGDDYAAMGQVLERRYSKQIDVDKIPDIIFIDGGKGQLNRAVE
IVSQYWREWPKHPLLIGIAKGVTRKPGLETLITPEGREFNLPSDAPALHLIQHIRDESHD
HAIAGHRAKRAKTRRTSPLEGIEGIGPKRRQALLKYMGGLQELKRASVEEIAKVPGISKS
LAENIYQALKH
NT seq 1836 nt   +upstreamnt  +downstreamnt
gtgtcggaacacatttttgattcaacatcatttctaaagactgtaacaaaccaacccggc
gtctaccgaatgtacgacgccgagtcggtcgttatttatgtcggcaaagccaaagacctc
aaaaaacgccttactagctactttcgtaaacgagtcgatagcgaaaagacacgtgcctta
gtcagcaacattgcgaaaatcgatgttactgttactcatacagaaaccgaagcactgatc
cttgagcacaattatattaagcagtatttacccaaatataatgtgttgctaagagacgat
aagtcttatccctatattttcttatcgggacataaacatccacggctttcgatgcatcga
ggagcacgacgtaagaaaggggagtatttcggcccttaccctgattctggtgctgttagg
caaactcttcaccttcttcaaaagatctttccggttcgtcagtgtgaagactctgtctat
gctaaccgtagccgtccatgcctaatgtaccaaatcggccgttgtgccggtccgtgtgtc
agcagcattatctccgatgaagaatatgcagaactggttggattgctacgcctgttcctg
caaggaaaagacagtaacgtattgcaaatgctggtggagaaaatggatgaagcaagccgt
aatctgaaattcgaagatgcggctaaatatcgcgaccagatacaagctattagacgggtt
caagagcagcaattcgtttccgaagacagcgatgatgacatggatgtacttgggtttgct
caagagaaaggtgtcgcttgtgtccatattctaatgattcgccaaggtaaagtactcggt
agccgcagtcatttcccgaaaatcccaagtaacaccgaccgaaaagaagtgttttacagt
ttcttaagccaatactatctgaatcaaacggaatctaggaccatccctacgcgaatcatc
cttaatgatgaccttgtagaggatatcagtacgttaggtgaagcactgtctgatattgcg
ggaaggaaagttattttccacgttaatccgacggggtctcgtggtcgttaccttaaacta
tcaaacaccaacgcattaacggcaattaccaccaaaatcaatcataagatgacaatcaac
cagcgcttcaaagcccttcaagaagaactggaattggaaagcataactcgcatggagtgc
ttcgatatcagtcatacgatgggtgaaagtactattgcatcttgcgtggtgtttaatcaa
gaagggccgttaaagcaagagtatcgtcgctacaacattactggtattactggcggtgac
gattatgctgccatgggacaggttcttgaacgtcgctactctaagcaaatcgatgtagac
aaaattcccgatattatttttattgatggtggtaaaggtcaactcaaccgtgcggttgaa
atcgtttctcagtattggagagagtggcctaagcatccattattaattggtatcgctaaa
ggggtgactcgtaaaccaggattagaaacgttaattacccctgaggggcgcgagtttaac
ttaccaagtgacgcgccagcacttcatctaattcaacatattcgcgatgagagtcatgat
catgcgatagcaggccatcgagccaaacgtgctaaaacaagacgtaccagtccgttagaa
gggattgaaggaatcggtcctaagcgtcgtcaagccttgctgaagtacatgggtggttta
caagaacttaagcgagccagtgtagaagaaatcgccaaagtacccggaattagcaaatct
ttggcagaaaacatctatcaagcattgaaacactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (17)   

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