KEGG   Vibrio mediterranei: BSZ05_01175
Entry
BSZ05_01175       CDS       T04936                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K10912  two-component system, repressor protein LuxO
Organism
vsh  Vibrio mediterranei
Pathway
vsh02020  Two-component system
vsh02024  Quorum sensing
vsh05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BSZ05_01175
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BSZ05_01175
   05111 Biofilm formation - Vibrio cholerae
    BSZ05_01175
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:vsh02022]
    BSZ05_01175
Two-component system [BR:vsh02022]
 Lux family
  LuxQN/CqsS-LuxU-LuxO (quorum sensing)
   BSZ05_01175
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 Mg_chelatase HTH_29 AAA HTH_23 AAA_16 HTH_28 AAA_2 HTH_38 HTH_17 AAA_22 AAA_19 HTH_30 HTH_7 TIP49 HTH_22 HTH_1 HTH_11 PIF1
Other DBs
NCBI-ProteinID: ASI88536
Position
1:complement(262078..263475)
AA seq 465 aa
MQQLFDEPKSRYLLMVEDTASVAALYRSYLSPLGIDINIVGNGRDAIQSLAHRTPDLILL
DLRLPDMTGMDVLDAVKEFNPDVPVIFMTAHGSIDIAVDAMQHGAQDFLIKPCEADRLRV
TVTNAIRKASKLRNEINDSSSQNYQGFIGSSQPMQAVYRTIDSAASSKASIFITGESGTG
KEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAASDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSRMKKVDVRFVCATNRDPWKEVQEGRF
REDLYYRLYVIPLHLPPLREREEDVIEIAYSLLGFMSHEEGKSFVRFAQDVIDRFIQYEW
PGNVRQLQNVLRNVVVLNQGKEIELSMLPPPLNEPAVKPANSSNVVSVSFGPQDIQPLWK
TEKTTIEQAIEACDGNIPQAAKHLDVSPSTIYRKIQAWNASEKKA
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgcaacaactattcgacgagccaaagtctcgctatctacttatggtagaagacacggct
tccgttgctgcgctgtatcgctcgtatctatctccattgggtatagatatcaatatcgtt
ggaaacggtagagatgcaattcaaagtttagcgcaccggacgcctgacctcattctactg
gatttacgacttcccgacatgacgggtatggatgtattggacgctgtaaaagagttcaat
cctgatgtacctgtcatctttatgactgctcatggatctatcgacatcgcggtagacgct
atgcagcatggcgctcaggactttttaatcaaaccgtgcgaagccgaccgacttcgcgtg
acggtaaccaacgccattcgcaaagcctctaagctacgtaatgagattaatgattctagt
agccaaaactaccaaggattcattggcagtagccaacccatgcaggcggtttaccgcact
attgactctgccgcttccagcaaggccagtatctttattactggagaaagtggtacaggt
aaggaagtttgcgcagaggcgatccacgctgcgagtaaacgaggcgacaagccatttatt
gcgatcaactgtgccgcaataccaaaagatcttattgagagtgagttgtttggtcatgtc
aaaggtgcctttacgggggccgcaagtgaccgacaaggtgctgcagaactcgctgatggc
ggcacgctgtttcttgatgagctatgtgaaatggatctcgatctacaaactaaactactg
cgctttattcaaacgggtaccttccaaaaagtgggttcttcacgtatgaagaaagtggat
gtacgtttcgtatgtgcgaccaaccgagatccttggaaagaagtgcaagaagggcggttt
agagaagatttatactatcgactttatgttatccctctccatttgccaccgctccgagag
cgtgaagaagatgtgattgaaattgcctactcgttattgggctttatgtcgcatgaagag
ggtaagagctttgtgcgttttgctcaagatgtcattgatcgcttcatccagtacgagtgg
ccgggtaatgtccgccaattgcagaatgtactgcgcaatgtggtggtattgaatcagggc
aaagaaatagagttaagcatgttgccgccgcctttgaatgagccagcggttaagcccgca
aactcaagtaatgtggtatcagtatcatttgggccacaggacatccagcctttgtggaaa
actgaaaaaaccaccatcgagcaagcgatagaagcgtgtgacggtaacattccacaagca
gcgaaacacttggacgtgagtccctcgacaatctaccgcaaaatacaggcatggaatgca
agcgagaagaaagcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (23)   
   Pfam (23)   
All databases (32)   

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