KEGG   Vibrio mediterranei: BSZ05_08690
Entry
BSZ05_08690       CDS       T04936                                 
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
vsh  Vibrio mediterranei
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vsh03009]
    BSZ05_08690 (rumA)
Enzymes [BR:vsh01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     BSZ05_08690 (rumA)
Ribosome biogenesis [BR:vsh03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    BSZ05_08690 (rumA)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Methyltransf_25 Methyltransf_11 MTS RrnaAD PCMT Met_10 Methyltransf_15 Cons_hypoth95 Methyltr_RsmB-F Ubie_methyltran Methyltransf_12 Methyltransf_4 Methyltransf_23 PrmA DOT1 NodS
Other DBs
NCBI-ProteinID: ASI89843
Position
1:1827147..1828460
AA seq 437 aa
MARFFKPIKKTSFSKKHQEVNIERMDHHGAGIGYLNNKPVFVEGALTDEKVLVQLTESKA
KFAKATLIKVLEASEQRVKPFCPHYHECGGCNQQHVERQQQIENKQVALSQLMNKLAGQS
VPLAPSITGEGLGYRRRARLSIHLDKQRNLVMGFRRKQSNHIVEIDHCPVLNAQLNVLIP
PLRDIFVGFKQQQSLGHLELVMGDNGPVVVVRHIKPLTNYDQKRLVEFADSQALTLYLMP
ESGQLQLITGEQPYYSEVGVELPFLPTHFIQVNREINSKMVAQALEWLAPESSDNVLDLF
CGLGNFTLPLAKLCQRVVGVEGIQDMVDWAQQNAALNHLTNVEFYQANLEQDLSEMPWAK
QQFDKILLDPARAGASGVIDQVSALGATRVLYVSCNPATLARDTQSLIEQGYKLVRLGMM
DMFPHTSHLESMALFEK
NT seq 1314 nt   +upstreamnt  +downstreamnt
atggcacgtttttttaaaccaataaagaaaacttcattctcaaaaaagcaccaagaggtg
aacattgaacgcatggaccatcatggtgcaggtattggttacttaaataacaaaccggta
tttgttgaaggtgcgctcacagatgagaaggtgttggtgcagttaacggaaagcaaagca
aagtttgctaaggctaccttgatcaaagtgctagaagcttctgagcaacgcgtgaagcca
ttttgtcctcattaccatgagtgtggcggctgcaatcagcagcatgtagaacgtcagcag
cagattgaaaacaaacaagtagctttatcacaattgatgaataagttagcgggccaatcc
gtgccgttagctccctcaattactggagaaggccttggttatcgccgtcgtgctcgtttg
agtattcacctcgataagcagcgcaacttagtcatggggtttcgccgtaagcagagcaat
cacattgttgagattgaccactgtccggtattgaatgcgcaattaaacgtattgataccg
cctttacgagacatattcgtcggctttaaacagcaacagtcacttggccaccttgaattg
gtcatgggtgataatggacctgtggtcgttgttaggcacatcaaacctttgactaattac
gaccaaaaacgcttggtcgagtttgctgacagccaggcactcacgctttacctgatgcca
gagtcagggcagttacaactaataacgggtgaacagccttattattcggaagtaggggtt
gaattacccttcctgccgacacactttattcaagtgaaccgcgagataaatagcaaaatg
gtcgctcaagcactggagtggctagcgcctgaatccagtgacaatgtactcgatctcttt
tgtggcttgggtaatttcactttacctttggcgaaactatgtcagcgtgtcgtaggtgtt
gaaggtattcaagatatggtggattgggcgcagcaaaatgccgctcttaatcacctaacg
aatgttgaattttatcaagcaaatctcgagcaagatctctctgagatgccatgggcaaaa
caacagtttgataaaatcctgcttgaccctgccagagcaggcgcaagcggcgtgatagat
caagtttctgcgctaggagcaacgcgagtgctttatgtttcttgcaatcctgctaccctt
gccagagatactcaaagcttgattgagcagggctataagttggttcgattgggtatgatg
gatatgttccctcacaccagtcatctagaatccatggcgctgtttgagaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (27)   

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