KEGG   Vibrio mediterranei: BSZ05_09640
Entry
BSZ05_09640       CDS       T04936                                 
Name
(GenBank) c-di-GMP phosphodiesterase
  KO
K20965  c-di-GMP phosphodiesterase [EC:3.1.4.52]
Organism
vsh  Vibrio mediterranei
Pathway
vsh05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    BSZ05_09640
Enzymes [BR:vsh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.52  cyclic-guanylate-specific phosphodiesterase
     BSZ05_09640
SSDB
Motif
Pfam: EAL GGDEF PAS_4 PAS_9 PAS_8 PAS
Other DBs
NCBI-ProteinID: ASI90022
Position
1:complement(2045036..2047075)
AA seq 679 aa
MSSKMLKEYFAKLTSNSPFFFAILDDEHHYCMVNDRYCDVAGLTHSDLVGMNDLQILGER
FYNQLKPYYDRALQGESIEAEVTLDESDVESSLHFSVSPILNDGVIEYIVFHAIDTSEKQ
ILTRSLEESESKFLKLSQLIPDGLILVEDDCILSANPASARLFGYAKSTDLLGESLNRLL
SNEKNNNRVQLDLANVASGTPLHFLTSEYCGTQRRLSLHVDDANLFGNSAHLVLIQDMDE
KPNPVAQNSNEDVNIDTLTKLYNRLGFTRCLDHFIQDKTPLVMLYLDIDNFKNINDSLGH
HIGDRVIQEVSSRLKRHLPQQSVLAHLGGDEFGIILPEPESNSTVEMLAEKIIGLINQPF
DLHHFSKRLACSIGSVHYPNDGNDARILLQNADTAMYEAKARGRNRLVKFNDQMNKEARM
RLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPASFIPVAEQ
AGLIESLGRVVMRDVFNTVKRWKLQGILPGRVAINLSPEQFGNPKLIDYMERLLRSTGLD
PSCITFELTESAVMSNSEHTLQMLDAIKKLGFALSIDDFGTGYSSLSYLAHFPIDELKID
RAFIMDIDTLPKQLTVIENIINLGKSLNLSVVAEGVETRHQATLLSNLNCNSIQGFHFHR
PQPKHEVEALFAQNRRHRN
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgtcatccaaaatgttaaaggaatactttgctaagttaacatccaatagccccttcttt
tttgctattttggatgacgagcatcattactgtatggtcaacgaccgttattgtgatgtg
gcagggttaacacacagcgacttagttggcatgaatgacttgcaaatactaggtgagcgt
ttttataaccagttaaaaccctactacgatcgtgcactacaaggtgaatcgattgaagcc
gaagtgacacttgatgagtcggatgtcgagtccagcctgcatttcagcgtgtcgccaatc
ctcaatgacggcgtcattgaatacatagtgttccatgccatcgacacatccgaaaaacag
atcctaacccgctctctcgaagaatcagaaagcaagttcctcaaactgtctcagcttatc
ccagatggattaattctggttgaagacgattgtattttatcggccaaccctgcgtctgca
cgtctatttggttacgcaaaaagtaccgatttactaggtgagtcgttaaaccgcttacta
agtaacgagaaaaataacaatcgtgtgcaactcgatttagccaatgtcgctagcggcaca
ccactgcattttttgaccagtgagtactgcggaacgcagcgccgactgtcactgcatgtc
gatgacgctaatctatttggcaacagtgctcatttagtcctaattcaagatatggacgaa
aagccaaacccagtggctcaaaacagtaatgaagacgtcaacattgataccttgacgaag
ctctacaaccgactaggtttcacccgttgcttggatcattttattcaagataaaactccg
ctcgtcatgctttacctcgacattgataactttaagaacatcaatgactctttagggcac
cacattggcgaccgagtgattcaggaggtgtcttctcgactgaagcgtcaccttcctcaa
caatcggtattggcccatttaggcggtgatgagtttgggatcattctcccagagccggaa
agcaacagcacggtagaaatgttggctgagaaaatcattggtctcatcaaccaacctttc
gatttacaccacttcagcaaacgccttgcttgctccattggcagtgttcattacccaaac
gatggaaatgatgcacgtatcctgctgcaaaatgccgatacggccatgtatgaagccaaa
gccagaggtaggaaccgtctcgttaagttcaatgaccaaatgaacaaagaagcgcgcatg
cgcctttggttggaaatagaactgcaaaaggcgctacagcaaaatggcttggaagtatgg
tatcaacccaaggtcaatgcccgtgactttagtatcaacggtgcagaagctctagttcga
tggaagcaccccgtcgaagggtatataagcccggcttcgtttatcccagtggcagaacaa
gcaggactgatcgaaagccttggccgcgtggtcatgcgtgatgtgttcaataccgtcaaa
cgctggaaactacaaggtatcttaccgggtcgcgtggcgatcaacttgtctccagaacaa
tttggtaaccctaagcttatcgattatatggagcgcttattacgcagcacaggactggat
cctagctgtatcacgttcgaactcactgaaagtgcggtaatgagcaacagtgaacacaca
ttgcaaatgctcgatgccattaagaaactcggctttgcgttgtctattgacgacttcggt
accggatactcttcgctatcctacttagcgcacttcccaatagatgaacttaaaatcgac
cgcgcctttatcatggatatcgatacactgccaaaacagctcaccgttatcgaaaacatc
atcaatctcggtaaatcactcaatctctcggtagtcgccgaaggtgtggaaacacgccac
caagcaacactactttccaatcttaactgcaactccattcaaggcttccactttcaccga
ccacaacctaagcacgaagtcgaagcactatttgcgcaaaaccgtcgtcatcgaaattga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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