KEGG   Vibrio spartinae: Vspart_00374
Entry
Vspart_00374      CDS       T07037                                 
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
vsr  Vibrio spartinae
Pathway
vsr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Vspart_00374 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vsr03021]
    Vspart_00374 (rpoA)
   03400 DNA repair and recombination proteins [BR:vsr03400]
    Vspart_00374 (rpoA)
Enzymes [BR:vsr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Vspart_00374 (rpoA)
Transcription machinery [BR:vsr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Vspart_00374 (rpoA)
DNA repair and recombination proteins [BR:vsr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Vspart_00374 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: QMV13166
UniProt: A0A1N6M285
Position
1:412311..413303
AA seq 330 aa
MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG
DVEIVNPEHVICHLNDDNAEVAMRIKVQRGRGYVPASARIHTDEDDRPIGRLLVDATYSP
VDKIAYTVEAARVEQRTDLDKLVIDMETNGTIEPEEAIRRAATILAEQLDAFVDLRDVRV
PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS
LTEIKDVLASRGLSLGMRLENWPPASIAED
NT seq 993 nt   +upstreamnt  +downstreamnt
atgcagggttctgtaacagaatttcttaagccacgtcttgttgatatcgaacaaatcagc
acgacacacgcaaaagtaactcttgagccgttagagcgtggtttcggccatactctgggt
aatgcacttcgccgtattcttctttcgtctatgccaggttgtgccgtgactgaagttgaa
attgaaggcgtactacacgagtacagcaccaaagaaggtgttcaagaggatatcctagag
atccttctgaacctgaagggtttagctgttcgcgttgccgaaggcaaagatgaagtgttc
attacactgaacaaatcaggctcgggccctgttgttgcaggtgacatcactcatgatggt
gatgttgagatcgtaaaccctgagcacgttatttgtcatcttaatgatgacaatgctgag
gtcgcaatgcgcatcaaggttcaacgtggtcgtggttatgttccggcttctgctcgtatc
catacagatgaagatgatcgtccaattggtcgcctacttgttgatgctacctacagcccg
gtggataaaatcgcctatactgtagaagcagcacgtgtagaacagcgtactgacttagac
aagcttgtcatcgatatggaaacaaatggcacaatcgaaccagaggaagctatccgccgt
gcagcaacaatacttgctgaacagttggatgcattcgtagatctacgtgatgtacgagtt
cctgaggagaaagaagagaagcctgaattcgatccgatcctattgcgtcctgtagacgat
cttgaactaacagttcgctctgctaactgtttgaaagcagaagcgattcactacatcggt
gatctagtacagcgtactgaggtagaattacttaaaacacctaacctcggtaagaaatct
ttgacagagattaaagacgtgcttgcatcacgtggtctttctctgggtatgcgcctagaa
aactggccgccagcatctatcgctgaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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