KEGG   Vibrio tapetis subsp. tapetis: A1344
Entry
A1344             CDS       T05424                                 
Name
(GenBank) DNA ligase, NAD(+)-dependent (fragment)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
vta  Vibrio tapetis subsp. tapetis
Pathway
vta03030  DNA replication
vta03410  Base excision repair
vta03420  Nucleotide excision repair
vta03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vta00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A1344
   03410 Base excision repair
    A1344
   03420 Nucleotide excision repair
    A1344
   03430 Mismatch repair
    A1344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vta03032]
    A1344
   03400 DNA repair and recombination proteins [BR:vta03400]
    A1344
Enzymes [BR:vta01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A1344
DNA replication proteins [BR:vta03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A1344
DNA repair and recombination proteins [BR:vta03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A1344
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A1344
   MMR (mismatch excision repair)
    DNA ligase
     A1344
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A1344
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB
Other DBs
NCBI-ProteinID: SON49323
UniProt: A0A2N8ZBR4
Position
A:complement(1415935..1417125)
AA seq 396 aa
MMNMMTEQQYAELKESLHYHGVRYYVEDSPEIPDAEYDRLMRQLLEAELQHPEWVSVDSP
SQRVGGVALDGFGSVKHEIPMLSLDNAFDNDELKAFYKRAQDRSPETLSARFSCEPKLDG
LAVSLLYVDGLLVQAATRGDGATGENITENVRTIKAIPLKLQGTGWPTRLEVRGEVFMPK
AGFNALNEKALKKGLKPFVNPRNAAAGSLRQLDSKITATRPLSFYAYSVGVVEGAQLSFS
HYQRFIELKNWGLPMCPETKKVEGLDNVIAYYQDIMEKREALSYEIDGVVIKLDDIKVQE
NLGFVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATL
HNADEIERLGVCIGDSVIIRRAGDVSVTLASNVSYR
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgatgaacatgatgaccgagcaacaatacgctgagttaaaagaaagccttcactatcat
ggtgtgcgctattacgtagaagatagcccagaaattcctgatgcggaatatgaccgatta
atgaggcaattgcttgaagctgaattacagcatccggagtgggtttcagtcgattccccg
agccaacgcgttggtggtgtcgctttagacgggtttggctcggtaaagcatgaaattcca
atgttgtctttggataatgcttttgacaacgatgaactgaaggccttttacaagcgagcg
caagatcgatcgcctgaaactttgtcagctcgattcagttgtgagccaaaattagatggc
cttgcggtaagtttattgtatgtcgatggcttactcgtgcaagcagcgacacgtggtgat
ggcgcaacgggcgaaaacatcacggaaaacgtgcgaacaattaaggcgattccattaaag
cttcaaggaacaggttggccgacacgcttagaagtgcgtggcgaagtattcatgccaaag
gcgggttttaacgcgctgaatgagaaagcactaaaaaaagggctcaagccattcgtaaac
ccgagaaatgcggcggctggtagcttacgtcaattggactcgaaaataacggccacacgc
ccgttaagtttttatgcgtacagcgtcggcgtcgttgaaggtgcacagttgtcattcagc
cattaccagcgctttattgaactcaaaaactggggactaccaatgtgcccagagaccaag
aaagttgaagggctagataacgttattgcgtattaccaagatattatggaaaagcgcgaa
gcactcagttatgagatcgatggcgtcgttattaagttagatgatattaaagttcaagaa
aacttaggctttgtagcccgagcacctcgctgggccattgcttataaatttcctgcgcaa
gaagaaatcacggttctcaatgatgtcgagtttcaagttggccgtactggtgcgatcacc
ccagtagcaaagcttgaacctgtgtttgttggcggtgtcactgtcagtaatgcgacattg
cataatgctgatgaaattgaacgcttgggcgtatgtatcggagatagcgtaattattcgt
agggcgggtgacgtgagtgtcaccttagcaagtaatgtttcatatagataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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