KEGG   Vibrio tapetis subsp. tapetis: A1646
Entry
A1646             CDS       T05424                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I, omega subunit
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
vta  Vibrio tapetis subsp. tapetis
Brite
KEGG Orthology (KO) [BR:vta00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vta03032]
    A1646 (topA)
   03400 DNA repair and recombination proteins [BR:vta03400]
    A1646 (topA)
Enzymes [BR:vta01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     A1646 (topA)
DNA replication proteins [BR:vta03032]
 Prokaryotic type
  DNA Topoisomerases
   A1646 (topA)
DNA repair and recombination proteins [BR:vta03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      A1646 (topA)
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Toprim_2
Other DBs
NCBI-ProteinID: SON49625
UniProt: A0A2N8ZCK2
Position
A:complement(1732091..1734733)
AA seq 880 aa
MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHVRDLPTAGQSSGAKAAAISTKGMSPEE
KARIKKEKDRKSLIKKMGINPYNDWEANYQILPGKEKVVAELQKLAKDADHVYLATDLDR
EGEAIAWHLREIIGGDEQRYKRVVFNEITKNAIQQAFETPGELNIDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDVHADTKTADQTDF
RLQVAQKDGVAFKPVNEAQASSAVTTLEKASYEVCKREDRPTSSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSSEAVETLREYIASEYGNQYLPEKAKV
YGSKEGAQEAHEAIRPSSVDVKTEDLKGMEADAHKLYQLIWNQFVACQMTPAKYDSTTLS
VRAAEFTLKAKGRILKFDGWTRVQRPMGKNEDQILPAVQIGDKLDLVALDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVSDRLDDSFN
DLMNYDFTARMEAKLDQIAEGETSWTGVLDQFFVDFTGDLEKAELDEDVGGMKPNNIVET
DIACPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDETRKMHVCGNNPNCEGYVVEFGEFKVKGYDGPLVECDKCGS
DMVLKNGRFGKYMDCTSEDCKNTRKILRNGDVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVKELVEYKERITDKFKYLTTAPVADPDGRPTVVRFSRKSK
ENYVRSEIDGKPSGWTGLYIDGKWEITDKRKKPKAKADEK
NT seq 2643 nt   +upstreamnt  +downstreamnt
atgggtaaatctctcgtaatagtggagtcaccagccaaggcaaaaacgattaacaagtat
cttggtaaagattacattgttaagtcgagtgtaggtcacgtacgtgatttaccaaccgcc
ggacagagcagtggcgcgaaagctgcggctatctctaccaaaggtatgagccctgaagag
aaagctcgtatcaagaaagaaaaagatcgtaaatcgctgattaagaaaatgggtatcaat
ccatacaatgattgggaagcgaattatcagattttaccgggcaaagaaaaagttgtcgcg
gaattacagaaattagcaaaagacgctgaccatgtatatctcgcaaccgatttggaccgc
gaaggagaagctattgcgtggcaccttcgtgagatcatcggtggcgatgaacaacgttac
aagcgtgtggtttttaatgagatcactaaaaacgcaattcaacaagcgtttgaaactccg
ggtgagttaaacattgatggcgtaaacgcccagcaagcacgtcgctttatggaccgtgtt
gttggctttatggtctccccactgctttggaaaaaagtggcgcgtggtttatctgccggt
cgtgttcaatcggttgctgttaagctgttggttgagcgtgagcgtgaaatcaatgcgttc
attccagaagagttctgggatgttcacgctgacacaaaaacggccgatcaaaccgatttc
cgtttgcaagtggctcaaaaagacggcgtcgcatttaagccagtcaatgaagcacaagca
agctcagcggtgactacgttagaaaaagcaagctacgaagtttgcaaacgagaagatcgc
ccaacgagcagcaagccatcagcgccttacatcacttcaacgttgcaacaggcggcgagt
acgcgtcttggttacggcgtaaagaaaacaatgatgcttgcgcagcgtttgtatgaaggt
ggttacatcacttacatgcgtacagattcaaccaacttgagctctgaagcagtagaaaca
ctgcgtgaatacattgcgagcgagtatggcaatcaatacctgcctgaaaaagcaaaagtt
tacggcagcaaagaaggtgctcaagaggcgcacgaagcgattcgtccttcaagtgttgat
gtaaaaactgaagatttgaaaggtatggaagccgatgcacataaactgtatcagttaatc
tggaaccagtttgtcgcgtgtcagatgacgccagcaaaatacgactcaacaacattgagt
gttcgtgctgcggaattcacactgaaagcgaaaggccgtattcttaaatttgatggttgg
actcgtgttcaacgtcctatgggcaaaaatgaagatcaaatccttcctgcagtccaaatt
ggcgataaattagatttagtggcactcgaccctaaacaacactttactaagccaccagcg
cgctttacagaagccgcattggttaaagaattagagaagcgtggtattggtcgcccttca
acttacgcttcaatcatttctacgatccaagatcgtggttatgtgaaggtagagcagcgt
cgattctatgctgagaaaatgggcgaaattgtaagcgatcgattagacgatagcttcaat
gacctgatgaactacgattttaccgctcgtatggaagcaaaacttgatcagatagccgaa
ggcgaaacaagctggactggcgtattagatcagttctttgttgactttacgggtgatttg
gaaaaagcggaacttgacgaagatgtgggcggaatgaagcctaataacatcgtcgagact
gatatcgcatgtcctacctgttctcgacctatggggattcgtactgcttcaaccggtgtt
ttcctgggttgttcagggtacgctttaccaccaaaagagcgttgtaagacgacgattaac
ttaggcgacgaagaaggcatcatcaacgtacttgaagaagacgttgaaaccgccgcactt
cgtgctaagaaacgttgccctatatgcgaaacggcaatggacgcatacctaatcgacgaa
acgcgtaaaatgcacgtttgtggtaataacccgaactgtgaaggttacgtggttgaattt
ggcgagtttaaagtcaaaggctatgacggtcctttagttgaatgtgataaatgtggtagc
gacatggtgctgaaaaacggccgtttcggtaagtacatggattgcaccagcgaagactgt
aaaaacacacgtaagattctaagaaatggcgatgtcgcgccaccaaaagaagacccagtg
catttcccagaattgccgtgtgaaaactcagatgcttattttgttttacgtgatggtgct
tctggcttgttcatggccgcaagtaactttcctaagtctcgtgaaacgcgtgcgccgttg
gttaaagaattggtggaatacaaagaacgtattaccgataaatttaaatacctaacgacc
gcaccggttgccgatccagatggccgtcctacggtggttcgttttagtcgtaaatcgaaa
gagaattacgttcgttcggagattgatggtaagccatcaggctggactggcctttacatt
gacggtaagtgggaaattaccgacaagcgtaaaaagccaaaagcaaaagcggatgaaaag
taa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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