KEGG   Vibrio tapetis subsp. tapetis: B0088
Entry
B0088             CDS       T05424                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
vta  Vibrio tapetis subsp. tapetis
Pathway
vta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B0088 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vta03019]
    B0088 (deaD)
   03009 Ribosome biogenesis [BR:vta03009]
    B0088 (deaD)
Enzymes [BR:vta01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     B0088 (deaD)
Messenger RNA biogenesis [BR:vta03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     B0088 (deaD)
Ribosome biogenesis [BR:vta03009]
 Prokaryotic type
  rRNA helicases
   B0088 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 WSD
Other DBs
NCBI-ProteinID: SON51699
UniProt: A0A2N8ZIG8
Position
B:complement(71802..73748)
AA seq 648 aa
MSESVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF
SLPLLNKIDLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDVKGLKVLEIYGGASIVDQMR
ALSRGAHIVVGTPGRVKDLLTRERLHLDQAHTFVLDEADEMLKMGFVDDVTWILEKAPES
AQRVLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSIRERTVDNIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSQMEEIELPARDQVAEARLVKLGAELEADKEHKALESFVELIEKLQTNLEIDATT
LAAMLLKRQQGKRPLFYEGPDPMIEAIERDKKRRKERRDNPRDSRDGGRDGGRDGGRSYG
GNTADWATYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMNSE
VTGKLSKLRIRQKEVGAVVCDFDDFRESRGGRRDGGPRGGNRDGARQGHRGQRDGNREGG
GYRGNREGGRGSRDGGGNREGGERRFDRNRGGDHRGSHRGERSPRSEG
NT seq 1947 nt   +upstreamnt  +downstreamnt
atgtccgaatctgtaattcaatttaatgaattagcccttaacgaaaacatcctttcagct
cttgatagcatgggtttcgtttcaccaactccaattcaagcagcagctattcctttgctt
ctagaaggcagagatgcgttaggtaaagcgcaaacaggtactggtaaaacagcagcgttt
tctcttcctctgctgaacaaaattgatctgaaccaacacaaacctcaagcaatcatcatg
gcgccaactcgtgagcttgctattcaagttgctgcagaaatcaaaaaccttggtcgtgac
gttaaaggccttaaagttttagaaatctacggtggtgcatctatcgttgatcaaatgcgc
gctctaagccgtggtgctcacattgttgttggtactcctggtcgtgttaaagatcttcta
actcgtgaacgcctacacctagaccaagctcatacgtttgttctagatgaagcagatgaa
atgcttaaaatgggttttgtagacgacgttacttggattcttgagaaagcgccagaatct
gcacaacgtgtattgttctctgcaactatgcctccaatggttaagactattgttgaccgt
tacctacgtaaccctgctcgcgttgacgttgctggtactaaccacactgttgataaagta
gcgcaaaactactgggtagtgaaaggcgtagaaaaagacgaagcaatgtctcgtctactt
gaaactgaagaaactgatgcatcaatcgtgttcgttcgtactcgtcaagatactgagcgc
ctagctgattggttatctgctcgtggctttaaagctgctgcactgcacggtgatattcct
cagtctatccgtgagcgtactgttgacaacatcaaacaaggtgttatcgacatcctagta
gcaactgatgttgttgcgcgtggtcttgatgttccacgaatcactcacgtatttaactac
gacatcccattcgatgttgagtcttacattcaccgtattggtcgtactggccgtgctgga
cgtaaaggtaaagcgattcttcttgttcgcactaaccaaatccgtatgctacgtactatc
gagcgtgttactaaatcacaaatggaagaaattgaacttccagcacgtgatcaagtagct
gaggcacgtctagttaaactaggtgctgagctagaagcagataaagaacacaaagcacta
gaaagttttgtagagcttatcgagaagcttcaaacgaacttagaaatcgatgcaactact
cttgctgcaatgcttcttaagcgtcaacaaggcaagcgtcctttgttctacgaaggtcca
gacccaatgatcgaagcaatcgagcgtgataagaagcgtcgtaaagagcgtcgtgataat
ccacgtgacagccgtgatggcggtcgtgatggcggtcgtgatggtggccgtagctacggt
ggcaacactgctgattgggctacttaccagctacaagttggtcgtgagcaaggcgtccaa
gttaaagacatcgttggcgctctagcgaacgagcttggcctaactaaaggttctattggt
gcaatcaaactggctcaaggccacacgtttgtacagcttccaaaaacaatgaactctgaa
gtaactggcaagctaagcaagctacgtattcgtcagaaagaagttggcgctgtagtatgt
gactttgatgacttccgcgaatctcgtggtggccgtcgtgacggtggccctcgtggcgga
aaccgtgacggtgctcgtcaaggccatcgtggtcaacgtgacggcaaccgtgaaggtggc
ggttaccgtggcaaccgtgaaggcggtcgtggttctcgcgatggcggcggtaatcgtgaa
ggcggcgagcgtcgtttcgatcgcaaccgtggtggtgatcaccgtggtagccatcgtggt
gagcgttctccacgtagcgaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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