KEGG   Vibrio tubiashii: IX91_02630
Entry
IX91_02630        CDS       T03445                                 
Name
(GenBank) Fis family transcriptional regulator
  KO
K20919  sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vtu  Vibrio tubiashii
Pathway
vtu05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vtu00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    IX91_02630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vtu03000]
    IX91_02630
Transcription factors [BR:vtu03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    IX91_02630
SSDB
Motif
Pfam: VpsR Sigma54_activat Sigma54_activ_2 HTH_8 AAA_22 HTH_29 AAA_16 AAA AAA_5 AAA_2 AAA_13 HTH_50 HTH_22 HTH_7 HTH_IclR HTH_17 HTH_23 HTH_Tnp_1_2 DUF815 HTH_30 DUF134
Other DBs
NCBI-ProteinID: AIW13107
UniProt: F9T5T3
Position
1:536042..537376
AA seq 444 aa
MGSQFRMDSVPGSLVVVGGTYEPWLSVLEQVGWRCTQCGDLRKADALFTETGPCIGIVDL
SHDEFSLNGIANLVSKHKQVRWLAFIRESQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPHYGNQSDMGLIGDSIPVKRLRDQIKRIGPTDVSILIYGENGTGK
ETVARAVHRTSARANKEFISVNCRAMSERRIESDLFGINRDDMSEPSILERADGGTILLN
DILTLPRSQQFNLLRFLQEGMVDTASGRREVDVRVLAANSADIEKALIDGDFNEELYHYI
NVLRINVPSLKERAGDISILARHFLQEYSKEYNAQARSFTEEAARAMTRYHWPGNVRELM
NQIKRIVLMSDTVMLDEPHLDLPKRSDSRRSLKSIRERSERDALLLVLESHSGQVSMAAK
ELGVSRATMYRLLNKHNLISDIPA
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgggtagtcaattccggatggattccgttccaggttcgttggttgtagtgggaggaacc
tatgagccttggctgtcagttttagagcaagtaggttggagatgtactcagtgtggtgat
ttacgcaaagccgatgcactgttcactgaaacgggcccttgtatcggtattgttgatctt
agccatgatgagttcagtctcaatggtattgctaacttggtgagcaaacacaaacaggta
cgctggttagccttcattcgtgagtctcaattaagctcagatactatttgccaatttatc
gttaacttctgtatcgacttttttaccgctccaattcctgatgctcagttgctcagcacc
attggtcatcaattaggtatgctgaaacttgagaaaaaagtttggccacattacggcaat
caaagtgacatgggattaattggtgactctatccctgttaagcgtctacgtgatcagatt
aagcgcattggtcctactgatgtcagtatcttaatctatggagaaaatggcacaggtaaa
gaaaccgttgcccgtgccgtccatcgtacctctgcgcgagcaaacaaagagtttatctcg
gttaactgtcgtgcgatgtcggagcgtcgaatagagagtgacttattcggaattaatcgt
gatgatatgagcgagccatcaattctagagagagcggatggcggtacgatattactcaac
gatattctcaccttacctcgctcacagcagtttaatttattgcgtttcctccaagagggg
atggtagacactgcatcaggtcgtagggaagtggatgtgcgcgttttagcggcgaattct
gctgatattgaaaaagcattgattgatggcgattttaacgaagagctctatcactacatc
aatgtgctacgtattaatgttccgagtctaaaagaacgtgctggggatatttctatcctt
gcccgtcacttcttgcaggaatactcaaaagagtacaatgcccaagcgcgtagctttact
gaagaagcagcacgtgccatgactcgttatcattggcctggtaatgtccgcgaactgatg
aatcagatcaaacgtatcgttctgatgtcagataccgtgatgcttgacgagccacatcta
gatttacctaagcgtagtgatagccgccgtagcttaaagagtattcgtgagcgtagcgaa
agggatgccttgttgttggtgctagagtctcattctggtcaggtgtcgatggctgcaaaa
gagctaggtgtatcgcgtgcaaccatgtatcgattattaaacaaacacaacctaatttca
gacatacctgcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (21)   
   Pfam (21)   
All databases (29)   

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