KEGG   Vigna unguiculata (cowpea): 114178515
Entry
114178515         CDS       T06017                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
vun  Vigna unguiculata (cowpea)
Pathway
vun03022  Basal transcription factors
vun03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vun00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    114178515
  09124 Replication and repair
   03420 Nucleotide excision repair
    114178515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vun03021]
    114178515
   03400 DNA repair and recombination proteins [BR:vun03400]
    114178515
Enzymes [BR:vun01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     114178515
Transcription machinery [BR:vun03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     114178515
DNA repair and recombination proteins [BR:vun03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     114178515
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom
Other DBs
NCBI-GeneID: 114178515
NCBI-ProteinID: XP_027920270
Position
3:complement(3387532..3394929)
AA seq 769 aa
MGYGEKGGRPPFKKFKASSKFQDDPRKGFVEDEEIYGGDDAYDDDEGKTKDFSKLELKQD
HTNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
LETETVISVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLR
DDTISRARIISENVNGDGFTISKAAGEIEGTHDELLNEAEVAAAAEEKETHSFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREENICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPADEGPSLSYYHIEDQLALLGKVLSAGDDAVGLEQLEEDSDEIALHNARRTH
GSMSAMSGAKGMVYMEYSTGRNKGQGQIKSKPKDPAKRHFLFKRRYGAT
NT seq 2310 nt   +upstreamnt  +downstreamnt
atgggatacggtgaaaaaggaggaagacctccgttcaaaaagttcaaggcctcttctaaa
ttccaggatgatcctcgaaaaggatttgttgaagatgaagagatatatggcggcgatgat
gcatacgacgatgacgaagggaaaaccaaggattttagcaaattggagctgaaacaggat
cacaccaatcgccctctgtgggcttgcggcaatggccgcatattcctcgagactttctcg
cctttgtacaaacaagcttatgattttctcatcgcaatcgctgagcctgtttgcaggccg
gagtctatgcacgagtacaaccttactccacactcgctgtatgcggctgtttctgttggt
ctggaaactgaaacagttataagtgttttgaacaagttatccaagaccaagcttcccaaa
gagatgattaaatttatacatgattctactgcaaattatggcaaggtgaaactcgtgctc
aagaagaatcgctactttattgaatctccatttccagaggtattgaagacattgctcagg
gatgacactatatctcgagcaaggattatttcagagaatgtaaatggagatggatttaca
ataagcaaagcagcaggtgaaattgaaggcactcatgatgaattgctaaacgaagcagaa
gtggcagcggctgcagaagagaaagaaacacattcatttgaaattgatccttctcaggtt
gaaaatgtaaagcaacgttgcttgccaaatgcattaaattatcccatgttggaggagtat
gacttcagaaatgatacggtgaacccagaccttgacatggaactaaagcctcaagcacaa
ccacggccttatcaagagaagagtctcagtaaaatgtttggaaacggcagagcaaggtct
ggtataatagttctaccttgtggtgctggaaagtccctagttggtgtttctgcagcttgc
cgtataaaaaagagctgcctttgtttggcaacaaatgctgtttccgtagatcagtgggct
tttcaatttaaactttggtcaactatccgagaagaaaacatatgtcgattcacatctgat
agcaaagagagattccgtggtaatgctggagttgtcgtgacaacatataatatggttgct
tttggtggtaaacggtctgaagaatctgaaaagatcattgaagaaatacgaaacagagaa
tggggattgctcctcatggatgaggtgcacgtggttccagcccacatgtttcgaaaagtt
attagtatcactaaatctcactgtaaacttgggctcacagctacacttgtcagagaggac
gaaaggattacagatctaaacttcctgattggtcccaagctgtacgaggcaaattggtta
gatctagtaaaaggtggattcattgcaaatgtacagtgtgctgaagtatggtgtccaatg
acaaaagagttttttgccgagtatttgaagaaagaaaactccaagaagaggcaggcactt
tatgtgatgaatcctaataagttccgagcgtgcgagtttctcataaattaccatgaaagg
gcacgtggtgataaaattatagtctttgctgataatctgtttgctctcactgagtatgcc
atgaaacttcgcaaaccaatgatctatggtgctacaagccatgtagagaggacaaaaatt
ttacaagcgttcaaaactagcaaagatgtaaataccatatttctttcgaaggtgggtgat
aactcaatcgatattcctgaagcaaatgtgataattcagatctcttcacatgctggttca
aggagacaagaagcccagcgtctgggtcgtattcttagggcaaagggaaagcttcaagat
aggatggctgggggtaaggaggagtataatgcttttttttattcccttgtctcaactgat
acccaggagatgtattactcaactaagaggcaacaatttttaattgatcagggttacagt
tttaaggtaattacaagcttgcctcctgctgatgaaggtcctagtttgagctattatcat
attgaggatcaattggcgcttcttggaaaggttttgagtgctggtgatgatgcagttgga
ttagaacaactggaagaagattcagatgaaatagctcttcacaatgctcgccgcacgcat
ggatccatgagtgcaatgtccggtgcaaaagggatggtttatatggaatacagtactggg
cgtaacaaaggccaaggacagatcaagagcaagccaaaagatccagcgaagagacacttc
ttatttaaaagaagatatggcgcaacctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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