KEGG   Vigna unguiculata (cowpea): 114187501
Entry
114187501         CDS       T06017                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
vun  Vigna unguiculata (cowpea)
Pathway
vun03020  RNA polymerase
vun03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vun00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    114187501
  09124 Replication and repair
   03420 Nucleotide excision repair
    114187501
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vun03021]
    114187501
   03400 DNA repair and recombination proteins [BR:vun03400]
    114187501
Enzymes [BR:vun01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     114187501
Transcription machinery [BR:vun03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     114187501
DNA repair and recombination proteins [BR:vun03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      114187501
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 114187501
NCBI-ProteinID: XP_027931565
Position
6:31671734..31679244
AA seq 1194 aa
MDLEEEQEYDQQMMEEDDDEDDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGHQSDFAETIYRISFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
FASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRV
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEDGGWH
DLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
RPDRTSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDH
SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
ALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
SFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEIKSTKDQKKKGA
NT seq 3585 nt   +upstreamnt  +downstreamnt
atggatttggaagaggaacaagagtacgatcagcaaatgatggaggaagacgacgacgaa
gacgatatcacgcaagaggatgcgtgggctgtcatctccgcctatttcgaagagaaaggc
ctcgttcgtcagcaactcgattccttcgacgagttcatccaaaacactatgcaggaaatc
gtcgacgaatccgccgacatagaaattcgacccgagtcgcagcataatcccggtcaccaa
tctgatttcgccgagactatttacagaatcagcttcggccagatttacttgagtaagccc
atgatgacggagtctgatggagaaaccgctacgttgtttcccaaggctgctaggttaagg
aacctcacctattcagctcctttgtatgttgatgtctccaaaagggtcatcaagaagggg
cacgatggtgaagaagtcaccgagactcaagatttcactaaagttttcattggcaaggtt
cctataatgcttcggtctagttattgcacgttgtaccagaattcggagaaggatttgact
gaacttggagagtgtccatatgatcaaggcgggtatttcattattaatgggagtgagaag
gttctgattgctcaggagaagatgagcaccaaccatgtctatgttttcaagaagaggcag
cccaacaagtatgcctatgtggctgaagttagatcaatggccgagtctcagaacagaccg
cccagtactatgtttgtgcgcatgctctctcggactagttccaaagggggttcttcagga
caatatatacgtgccacacttccttatattcgaactgaaattcccatcattattgtgttt
cgagcgttggggtttgttgctgacaaagatatacttgaacatatatgctacgatttctca
gatactcaaatgatggagttgcttcgtccttccctagaagaagcgtttgttattcaaaat
caacaagttgcacttgactacattgggaaaagaggtgcaactgttggtgtaaccaaggaa
aagagaattaagtatgctaaggagatcctccaaaaggagatgctccctcatgtgggtgtt
ggagagtattgtgagaccaagaaagcatactattttggttatatcattcaccggctactt
ctttgtgcacttgggcggagggctgaggatgatagggatcattacggcaacaaaaggctg
gatctggctggccctctacttgggggtctttttagaatgttattcagaaagctaacgaga
gatgtcaggggatatgtacagaagtgtgttgataatgggaaagatgttaatctacaattt
gctatcaaagcaaaaaccatcacaagtggacttaaatactcactagctactggtaattgg
ggacaagcaaatgcggcagggaccagagcgggagtttcacaggtgctgaatcgtttaact
tttgcgtcaactttatctcacttgcgaagactaaattccccaataggacgtgaagggaag
ttagctaaaccaagacagctgcataattctcaatggggaatgatgtgtccagcagaaaca
cctgaaggacaagcttgtggacttgtgaagaatctggcattgatggtctacataacagtt
ggttcagcagcatatcctattctggagtttttggaagaatggggcactgagaattttgag
gaaatttctcctgctgtgattccccaagctactaagatttttgtaaatggttgctggatg
ggtatccatcgtgaccctgatatgttggtgagaactttgaggaagttgagacgtcgggtt
gatgttaatactgaagttggggttgtcagagatattcgtcttaaagaattgcgaatatat
actgattatggtcgctgcagtcgtcctttattcattgtggataagcaaaggcttctcata
aagaagagggatattcatgctttacaacagagggaatcccctgaagatggtggatggcat
gacctagtgtccaagggctttatagaatatattgacacagaagaagaagagactacaatg
atttccatgacaattaatgatcttgttcaagctaggctcaacccagaagaggcatattct
gatacatacactcattgtgaaatccacccatctctgattttgggtgtgtgtgcctctatc
ataccatttcccgatcacaatcagtccccacgtaatacttatcagtctgcaatgggaaaa
caagcaatggggatatatgttaccaactaccagtttcgaatggataccttggcctatgtt
ttatattatccacaaaagccactggtcactacaagagcgatggaacatcttcatttccgc
caactccctgctggaattaatgccattgtggcaatttcctgttattctggttacaatcaa
gaagattctgtcatcatgaaccaatcatcaatagaccgtggattctttcgatctcttttt
ttccgatcatatagagatgaagagaagaagatgggaaccctagtcaaagaagactttggc
cgaccagatagaactagcaccatgggcatgagacatggttcttatgataagctggatgat
gatggtcttgcaccaccaggcacacgagtatctggtgaggatgttattattggaaaaacc
accccaatatctcaggaagaggcacaggggcaggctttacgttacacgaggcgtgatcac
agcataagcttacgtcacagtgaaactggaatggttgatcaagttctgctgactacaaat
gctgatggattgagatttgtgaaagtaagagtgagatctgttcgcataccacagattggt
gacaaattcagtagtagacatggtcagaaggggacagttggtatgacttatacacaagag
gacatgccctggactgtggaaggcatcacccctgatattattgtcaatccacatgctatt
ccatcccgaatgacaattggtcagcttattgagtgtatcatgggtaaggtggccgctcac
atgggaaaggaaggagatgcaactccttttacagatgttactgtggacaatatcagcaaa
gctctgcacaaatgtgggtaccaaatgcgtggttttgagactatgtacaatggtcataca
gggagacgtctgagtgcaatgattttccttggtcctacatattaccaaagactgaagcat
atggttgatgacaagatccattctcgtggacgtggtcctgtgcagatcctcacaaggcaa
cctgctgagggacgctcacgcgatggaggtctccgatttggagagatggaacgagactgc
atgattgctcatggagctgctcatttcctaaaggagagattgtttgatcaaagtgatgca
tacagggtccatgtgtgtgagcgctgtgggttgatagccattgcaaatctcaagaagaat
tctttcgagtgcagggggtgcaagaacaaaacggacattgttcaggtttacatcccttac
gcatgtaagttgcttttccaagagttaatggccatggccatagcgccaagaatgcttacg
aaggagatcaaatctacaaaagaccaaaagaagaaaggagcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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