KEGG   Vitis vinifera (wine grape): 100250155
Entry
100250155         CDS       T01084                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100250155
   03041 Spliceosome [BR:vvi03041]
    100250155
   03036 Chromosome and associated proteins [BR:vvi03036]
    100250155
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100250155
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100250155
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100250155
Spliceosome [BR:vvi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    100250155
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    100250155
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-GeneID: 100250155
NCBI-ProteinID: XP_002283489
UniProt: A5B299
Position
6:join(1006066..1006806,1006897..1006980,1017302..1017544,1017927..1018094,1018318..1018431,1019977..1020465)
AA seq 612 aa
MRSSWADSVVNSAAENVAAGSSASNGVATAAKPTRGAYIPPHLRNLTPSSEPPAPAYSGP
SSANDRSGYSGNRWGGPRNDSNQTGYSSGGRTGGWNNKSGGWDRGREREVNPFGDDVDTE
KVFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIKRCKYVKPTPVQ
RHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGQASQRPPRGARTVYPLALILSP
TRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQQLRDLERGVDILVATPGRLVDLLERA
RVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGVRQTMLFSATFPKEIQKLAS
DFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMDLLHAQRANGVHGKQYLTLVFV
ETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKSGVTPILVATDVAARGLDIP
HVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNSSLAKALSELMQEANQEVP
AWLSRYAARSPYVGRNRRSGGGGRFGGRDFRRDASFNRGGTDYYSGGNSSTGYGTAGGYG
GGYGSGVTSAWD
NT seq 1839 nt   +upstreamnt  +downstreamnt
atgcgaagttcttgggcggattctgttgtgaactctgcagctgagaatgtagctgctggt
tcttctgctagtaacggggttgctactgctgctaagcctaccagaggtgcatacattcct
cctcatctccgcaaccttacaccctcatcagagccaccagcaccagcttacagtggccca
tcttctgcaaatgatcgatctggatatagtggaaatcggtggggtggtcccaggaatgac
tctaatcagactggttacagtagtggtggccgcacaggtggttggaataataaaagtggt
gggtgggatcgcgggagagagcgggaagtaaacccttttggggatgatgttgatacagaa
aaggtatttagtgagcaagagaatacgggtattaactttgatgcctatgaagatattcca
gtggagactagtggggataatgtgcctcctccagtgaatacctttgcagagattgacttg
ggtgaagcactcaatcaaaatatcaagaggtgcaagtatgtgaagccgacacctgtgcag
cggcatgccattccaatttccctggcagggcgagatctgatggcatgtgcccagactgga
tccggaaagacagcagcattttgctttccgattatcagtgggattatgaaggggcaggct
tcacagagaccaccgcggggggcacgtacagtatacccacttgctctcattctttctcct
acaagggagctctcttgccagatacatgatgaagctaagaaattttcatatcaaactgga
gtgaaggtggttgttgcttatggaggagcaccaattagtcaacagctgcgggatctagaa
agaggtgttgatattctggtggcgactcctggacggttggtagatttgctcgagagggca
agagtttcattacagatgataaggtatttagctctagatgaggcagatcgaatgctggat
atggggtttgaaccgcaaataaggaaaattgtggaacaaatggatatgcctccgcagggt
gtaagacagacaatgctgttcagtgccacctttccaaaagagatacagaaactagcctct
gatttcctttcaaattatgtttttctggctgttggaagagttggttcgagtactgactta
attgtccaaagagttgagtttgttcatgatactgacaagagaagtcatctcatggatctt
cttcatgcgcagagggcaaatggtgtccatggaaagcaatatctgactttagtctttgtg
gagactaagaaaggtgctgattcgctggaacattggttgtgtatgaatggttttcctgca
actactattcatggtgacagaacacaacaggaaagagaacaggcattgaggtcatttaaa
agcggtgtcaccccaattttggttgctacagatgtggcagcccgtggtcttgatattccc
catgttgcgcatgttgtcaactttgacctaccaaatgacattgatgattatgtccaccga
attgggaggacaggacgtgctgggaaaacaggtttagcgactgcattcttcaatgacaac
aattcgtcattggcaaaggctttatctgagctaatgcaagaagcaaatcaagaagtacct
gcttggctgtcacgttatgcagctcgatctccttatgttggaaggaaccgtcgttctggg
ggaggaggccggtttggtggccgtgactttcgaagagatgcctcttttaataggggcggc
acagattactatagcggaggcaacagcagcactggatatgggactgctggcggatatgga
ggaggatatggttcaggggtgaccagcgcgtgggactaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (12)   
   RefSeq(nuc) (4)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (48)   

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