KEGG   Vitis vinifera (wine grape): 100253978
Entry
100253978         CDS       T01084                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03022  Basal transcription factors
vvi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100253978
  09124 Replication and repair
   03420 Nucleotide excision repair
    100253978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100253978
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100253978
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100253978
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100253978
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 100253978
NCBI-ProteinID: XP_002284465
Position
18:join(3131124..3131172,3131274..3131362,3131587..3131860,3131946..3131992,3139230..3139267,3139348..3139393,3144152..3144205,3144305..3144373,3145877..3145953,3147627..3147722,3151903..3151975)
AA seq 303 aa
MGRSAVMAPVPSKLYSDDVSLLVVLLDTNPFFWSTASLPFSKFLSHVLAFLNSILLINQL
NQVVVIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLA
AGIGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRS
MVPIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKP
AGVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKT
PET
NT seq 912 nt   +upstreamnt  +downstreamnt
atgggacgaagcgcagtcatggcaccagtaccttcgaagctctattcagatgacgtcagc
cttctcgtggttttgctcgacaccaaccctttcttttggagcactgcttctcttccattc
tccaagtttctctctcatgttctagcgtttctgaattcgattcttctcatcaatcaactc
aatcaagtcgtggttatcgctaccggatgcaattcctgcaactttattttcgattcttct
tctgtgccggcgaatccaaatttggaaaatgggagaatgcctgctctttgttccaatttg
ttgcagaaattggaggagtttgtgaccggagatgaaaaattgagcaaggaagttttagcg
gctgggattgggtcttccctgctatcagggtctttgtctatggctctttgctatatacag
cgggtttttcgaacaggaccactgcatcctcagcctcgaatcttatgcctgcagggatct
ccagatggacctgaacaatatgttgcagtgatgaatgcaatattctcagctcagcgctca
atggttcccatagattcttgtgttataggagcccagcattctgccttcctgcagcaggct
tcttatattactgggggtgtgtatctgaagccccaacaactagacgggctgtttcaatat
ctctcgacagtatttgcaactgatttgcattctcgccgctttctacaacttcctaagcct
gcaggagtagatttccgtgcctcgtgtttttgccataaaaacacaattgatatgggctac
atatgttctgtctgtctgtctatattttgtaagcatcacaagaaatgttcgacctgtggg
tcagtttttggtcaagcccagtctgatggtaactcagcaacagaccggaaaagaaagact
ccagagacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (1)   
   Pfam (1)   
All databases (29)   

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