KEGG   Vitis vinifera (wine grape): 100259985
Entry
100259985         CDS       T01084                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100259985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100259985
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100259985
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     100259985
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40
Other DBs
NCBI-GeneID: 100259985
NCBI-ProteinID: XP_002269575
UniProt: F6I592
Position
19:complement(join(9715127..9715435,9716421..9716546,9716705..9716869,9717174..9717344,9718362..9718481,9718559..9718918,9720212..9721813,9722130..9722258,9726197..9726415,9726556..9726712,9726790..9726839,9728090..9728887))
AA seq 1401 aa
MASPGNPNQAAAFDMHKLFKPTSPSPQNPNNLNSSSPFPPSSYPPPPSASYPPPSGPYSY
PPQTSPFHHQHHYHIPYPQEQLSNMHHQRSVSYPTPLLQPPPHHLAPPNPNPGARLMALL
SPPTTNLDLTQQPAMPVAPIQQPASGVSEFAASPNVPILPSAPPPGIPNPAVVTASPVRM
PSSKLPKGRRLVGENVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQIAVNKTYIC
YGLKLGAIRVLNINTALRYLLRGHAQRVTDMAFFAEDVHLLASASINGRVYVWKISEGPD
EEDKPQITGKIVIAIQIVGEGESVNPRVCWHCHKQEVLVVGIGKRILKIDTTKVGKGESY
SADEPLNCPVDKLIDGVQFIGKHDGEVTDLSMCQWMTTRLVSASTDGTIKIWEDRKTLPL
LVLRPHDGHPVNSATFLTAPHRPDHIILITAGPLNREVKLWATESEEGWLLPSDAESWHC
TQTLDLKSSAEPCVEEAFFNQVLALSKSGLLLLANAKKNAIYAVHLEYGSNPAATCMDYI
AEFTVTMPILSFTGTSELLHGEHVVQVYCFQTQAIQQYALNLSQCLPLLPENVGVEKSDS
GVSHDVTNAEGFGTLEPPGSKLTEMPLTSSALKSTVLISSSESEPGVRFPVSSASIESAT
LSPESKPGALPLVNNDNDIVSIPSPPLPLSPRLSGKLSGFRSPTNNFEPGPTLGDRGDSD
QVVIDYSVDRQIDTVCTTLSDLPSLDDDSRNDENKVAQDDSSTILNPTVMFKHPTHLITP
SEIFMAVSSAEATHSTESKSEGEANIQDVSINSDVSNVEVEVKVVGETGSTQNDEFGLQG
ESQNLALENKEKAFCSQASDLGIEMAKECSALSSETYVVEESRQVDGARMEALARPSNAG
EDEVIDAIKDVSGKVADSAMPTTVPQSPAPTTKGKKHKGKNSQVSPSPTAFNSTDSSNEP
GANLSSPSVEAAVPHILAMQETLNQLLSMQKEMQKQISVLVAVPVTKEGRRLEATLGRSM
EKSVKANADALWANILEENAKHEKLVRDRTQQITSLITNSLNKDLPAILEKTVKKEMAAV
VPAVARTITPVVEKTISSAITETFQRGVGDKALNQVEKSINSKLEATVARQIQVQFQTSG
KQALQDALKSNLEASVVPAFEMSCKAMFDQVDSTFQKGMVEHATTVQQQFESTHSPLALA
LRDAINSASSMTQTLSGELADGQRKLLALAAAGANPTSVNPLVTQLSNGPLGGLHDKVEM
PLDPTKELSRLISERKYEEAFNGALQRSDVSIVSWLCSQVDLQGILSMVPLPLSQGVLLS
LLQQLACDINKDTPRKLGWMTDVAVVINPGDPMIAMHVRPIFDQVYQILNHHRSLPTTTS
SQGQSIRLLMHVINSMLMTCK
NT seq 4206 nt   +upstreamnt  +downstreamnt
atggcgtcccctggaaatccaaaccaagcggcagcgtttgatatgcacaaactcttcaaa
cccacaagccctagccctcaaaaccctaacaatctcaattcttcttctccatttccaccc
tcctcttatcctccaccgccttctgcctcttaccctccgccctctggcccttattcctac
cctcctcaaacctccccatttcaccatcaacatcactaccatatcccctaccctcaagag
caactctctaacatgcaccaccagcgctcagtttcttatcctactcctcttcttcaacct
ccgcctcaccaccttgctcctccaaaccctaaccccggtgctcgattgatggcgctcctc
agccctccgaccaccaatcttgatttgacgcagcagcccgccatgccggtggctccaatt
cagcagccagcttctggggtttccgaatttgcggcctctcccaatgttccgatcctgcct
tctgcccctccgccagggataccgaatcctgctgttgtcactgccagccctgtgcggatg
cctagcagtaagttgcccaaagggcggagattggtgggtgagaatgtggtgtatgatgtg
gatgttaggctgcaaggcgaggtgcagcctcagcttgaggtcactccgatcaccaagtat
gtttccgatcctggcctcgttttaggacgacagattgctgtcaataaaacctatatatgc
tacgggttgaaattgggggcgattcgggtgcttaatataaacaccgcactgagatatttg
ctcagaggtcatgctcagagggtgactgacatggctttctttgctgaggatgttcatctt
ttagctagtgcaagcatcaatggacgtgtttatgtatggaagatttctgaaggtccagat
gaggaagataagccacaaattacaggaaagattgtgattgccattcaaatagtaggagag
ggggaatctgtaaatccaagagtttgctggcactgtcacaaacaagaagttttggttgtt
gggattggaaaacgtattctgaagattgacactacgaaagttggaaagggtgaatcttat
tctgcagatgaacctctcaactgtccagtagacaagcttattgatggggtccaatttatt
gggaaacatgatggagaagtgactgatctgtcgatgtgccaatggatgaccactcgttta
gtttctgcttcaacggatggcacgataaagatctgggaagaccgcaagacacttcctctt
ctggtactgaggccacatgatggccatcctgtcaattcggctacattcctgactgctcct
caccgcccggatcacattattctcataactgcgggcccactgaatagggaagtgaagcta
tgggccacagaaagtgaagaaggctggctgctgcctagtgatgcagaatcatggcattgt
actcagacgttggacttgaagagttcagctgaaccttgtgttgaggaggcgttctttaat
caagtgttagcattgtctaaatctggccttctcttacttgcaaatgccaaaaagaatgct
atatatgctgtacatttggagtatggttctaatcctgcagcaacctgcatggactatata
gcagagtttactgtcactatgcctattttaagttttactgggacaagtgaattattacat
ggtgaacatgttgttcaggtatattgtttccagacacaagctattcagcagtatgctttg
aacttatcccagtgtttgccactgttgccggaaaatgtaggggtagagaagtctgactct
ggtgtttcacatgatgtgactaatgcagaaggttttggcaccttagagcctcctggaagt
aaacttactgagatgcctttaactagttctgcactcaaatcaactgtgctaataagtagc
tctgagagtgaacctggtgtgagatttcctgtgagctctgcttctattgagtctgccact
ttgagtccagaatctaaacctggtgctttacctttggtcaataatgacaatgatattgtt
tcaattccatcaccacctcttcctttgagtccaaggctgtcaggaaagttgtctggtttt
agaagtccaacaaataactttgaaccaggtcccacccttggcgatcgtggcgatagtgac
caagtagttattgattattcagttgacaggcaaatagatactgtttgtacaaccctctct
gatttgccttctttagatgatgattcaaggaatgatgaaaacaaagttgcacaagatgac
agttctaccattctaaatcctactgtcatgttcaaacatccaacacatctgattactcct
tctgagatattcatggccgtttcatctgctgaagctacccatagcactgagagtaagagt
gagggagaggccaatattcaagatgtctctatcaacagtgatgtgagcaatgttgaggtg
gaggttaaagttgtgggtgaaacaggatcaactcagaatgatgaatttggcttgcaagga
gaatctcagaatcttgctttagaaaataaggagaaagccttttgctcccaggcttcagat
cttggaattgagatggccaaagagtgcagtgcattatcatctgaaacttatgttgtggag
gaatctcggcaagttgatggtgctagaatggaggcattggcccggccttcaaatgcaggt
gaggatgaagtgattgatgctataaaagatgtgtctggaaaagtagctgattccgccatg
cctacaacagttcctcaatcaccagcaccaactacaaaagggaaaaagcataaggggaaa
aactctcaagtatccccatctccaactgctttcaattctaccgattcttccaatgagcca
ggtgcaaatttgagtagcccttcagtggaagctgctgttccccatattctggctatgcag
gagacacttaatcagcttttgtccatgcaaaaagaaatgcagaagcagatatcagtatta
gttgctgtcccagttaccaaagaaggtagaagattagaggctactctaggacggagtatg
gagaaatctgtcaaggccaatgctgatgctttgtgggctaatatcctagaagagaatgcg
aaacatgagaagttagtacgagatcgtacacagcagataacaagtttgattactaatagt
ttgaacaaggacttgccagccatattggagaaaacagtgaaaaaggaaatggctgcagtt
gtaccagctgtagctcgcacaattacgcctgttgttgagaaaacaatttcctcggctatc
acagagaccttccagagaggagttggtgataaggcattgaatcaagtggagaaatcaatt
aattcaaaacttgaagccactgttgctaggcaaattcaagtacagtttcaaacttctggc
aaacaagctcttcaggatgcattaaaatccaatctggaagcttcagtggtcccagcgttt
gagatgtcatgcaaagcaatgtttgaccaagttgactctacatttcaaaaaggaatggtt
gagcatgccactacagttcagcagcaatttgaatccacccattctcctttagcacttgct
ttaagggatgccattaattcagcatcatcaatgactcaaactttaagtggagaattggct
gatggtcaacgaaagctcttagctcttgcagctgcaggggcaaaccctacatcagtgaat
cccctggttactcaactgagtaatggacctttgggtggtctccatgacaaggttgagatg
cctttggatccaacaaaggagctatctagattgatatctgaacgcaaatatgaagaggct
ttcaatggagccctacaacgaagtgatgtctctatcgtgtcatggttgtgttctcaggtt
gatctgcaagggattttgtcaatggttcctctcccattgagccaaggagtactgctctcc
cttctgcagcagttggcctgtgacatcaacaaggatacaccccgaaaattgggatggatg
acagatgtggcagtagtcataaacccaggagaccccatgatcgcaatgcatgtgcggccc
atcttcgatcaggtctatcagatactaaaccatcatcgatccctacccaccacaaccagt
tcccaaggtcaaagcatccgccttcttatgcatgtcatcaactccatgctgatgacctgt
aaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (72)   

Download RDF
DBGET integrated database retrieval system