KEGG   Vitis vinifera (wine grape): 100267314
Entry
100267314         CDS       T01084                                 
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
  KO
K22377  E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vvi03009]
    100267314
   04121 Ubiquitin system [BR:vvi04121]
    100267314
Enzymes [BR:vvi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100267314
Ribosome biogenesis [BR:vvi03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    100267314
Ubiquitin system [BR:vvi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100267314
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 FANCL_C zf-C3HC4 zf-ANAPC11 zf-C3HC4_2 ParcG zf-RING_16 RINGv MMS19_N zf-RING-like C1_1
Other DBs
NCBI-GeneID: 100267314
NCBI-ProteinID: XP_059593510
Position
6:complement(join(8347845..8348072,8348499..8348729,8349114..8349572,8349721..8350745,8351577..8352285,8354141..8354879,8355415..8355941,8357703..8358192,8358336..8358994,8359762..8359914,8360257..8360359,8361282..8361373,8363834..8363911,8369077..8369139,8369678..8369780,8369868..8369923))
AA seq 1904 aa
MGRQKGEGARSKSRPSSSSLAASLLPSGTAAVGFGGYVGSSRLDSSLASEEFSDIDSEMA
QHLKRLARKDPTTKLKALTCLSMLLKQKSGKEIVLIIPQWAFEYKKLLMDYNREVRRATH
DTMTNLVLAVGRDLALHLKSLMGPWWFSQFDQIPEVAQGAKHSLQAAFPAPEKRLDALIL
CTTEIFMYLDENLKLTPQSMSDKVTALDELEEMHQQVISSSLLALATLIDILVGSQLEKP
GFESITAEPKHASKARATAISFAEKLFSSHRYFLDFVKSQSPAIRSATYSMLRSCIKNIP
HAFNEENMKTLASTILGSFQEKDPSCHSSMWDAMLLFSKRFPDSWRSVNVQKILLNRFWH
FLRNGCFGSQQISYPSLVLFLDSLPPKEIEGEKFFLEFFQNLWVGRNPSNPSNADRVAFF
QAFKECFLWGLHNASRYCNGVDAIHHFRVTLIDSVLVKLFWHEYMSFSSSKNQDVVRWGN
SKDPSESSTQLVHKRAMEKQNIKYPKSYAQDLGKCIIEILSGIYLLDHDLLSAFCSTFQE
NCLEIVKQTENREKSENVEQIVKFLLLVEQYAVLKDETWPLIHLVGPMLSKSFPLIRSLA
SPDAVRLFSVAVSVFGPRKIIQELICNKALSFGHLSHDGGEKLGQEDFLQVFKELFTPWC
LLGHDSSISAQLDLLLALFEDESFAEQWCMVITYATKLECCGAKPGSLDSNQIAVLAILM
EKAREKLKKRKVGVDFNHHQGCQPDHWHHELLDLAAVSVACSLPPYGTSDSRFIRAVLGG
SVEDDQASFLSRDAMILIFEDVLKKLLTFIMTSSFIWVKDAGSLLAPTAVDSMTELESSV
NMLEATQFALEILDGSFFCLQTFCEGSEVVPCLSAALFIIGWECNMARALDNAFDDQSME
ITKARMNFGEALLSLRGKINKTFWQSLSIPNQKKLGSILILTIRSAIFKEDKVNANEITS
LCFLWMAEVLECLCQDQYQEQNFLDLFLANSDVWPLWIMPDSGCAKRSASLKIKEISIKT
NTSGSHKFVAIIEKLISALGIDRVVAGYVSNTPNSTEEASKELATSHFYSRAWLAAEILC
TWKWQGGSALGSFLPLLCSYAKSGNCSLKEGLLDSIVNILLDGALVYGASGELRFFNVWS
ASDDEVESIEEPFLRALVSFLITLFTENIWGKDQAVILFGLLANKLFIGESVNAECLRIF
PLILSVLIRPLYTIESDELHRDAVPTSFEENQICDTIKDWVQRTLSFPPLTAWETGQDME
EWLQLVLSCYPLRALGGSKALNLERDIDPVERSLLLDLFRKQRHAGKSAAASQLPMVQIL
LSKLMAVSVGYCWKEFNEEDWEFVLFHLRRWIESAVVMMEEVAENVNDVIINRPSSDDKE
VILKELEHAVLLLDSPRINIARNALFAFSLFSGLTELQNAEDADNSNPLRRERWDLVKDR
IVEGILRLFFSTGVTEAIASSYTEASSVIASTRLDHPHFWELIALSIVNSSLHARDRAVR
SIELWGLSKGPISSLYAILFSSKPVPSLQFAAYFILATEPVSNSAIISKGTRYLVGNTTD
TCDIDSSSEEGIQLREDISCIIERLPYEILEVDLVAQQRVYVFLAWSLLLSHLLSSPPSS
PTRERLIQHIQESANSTILDCIFQHIPLELSSAYSLKKKDIEIPAELSEAATAATRAIST
GSLLFYVESLWPVGPVKMASLAGALFGLMLRVLPAYVRQWFSDLRDRSASSLIEYFTKAW
CSPPLIADELSQIKKASFADENFSVSVSKSANEVVATYTKDETGMDLVIRLPPSYPLRSV
DVDCTRSLGISEVKQRKWLMSMTSFVRNQNGALAEAIRIWKNNFDKEFEGVEECPICYSV
IHTVNHSLPRLACKTCKHKFHSACLYKWFSTSHKSTCPLCQSPF
NT seq 5715 nt   +upstreamnt  +downstreamnt
atggggcgacagaaaggagagggagccaggagcaagtcacgcccttcaagcagcagtctc
gctgcctcgcttctcccctcggggacagccgctgtcggatttggaggctatgtcggtagt
tctcggctcgattcatctctcgcatccgaagagttttcggacattgacagtgaaatggca
caacacttgaagaggcttgcaaggaaggatcccaccaccaagcttaaagctttgacatgt
ttatctatgctgctcaagcagaaatctggaaaggaaatagtactgatcattccacaatgg
gcatttgaatacaagaagcttttgatggactacaatagagaggttcgacgagctactcat
gacacaatgactaatcttgtcctcgctgtcggaagagatttagcattgcacctgaaatct
ttgatgggaccatggtggttttctcagtttgatcaaattcctgaggttgctcaaggtgca
aagcattcattgcaggctgccttcccagctccagaaaagagactagatgccttaatctta
tgcacaactgagatatttatgtatttggatgaaaatctaaagctcacaccacagagcatg
tctgataaagtaactgctttggatgaattggaagagatgcaccagcaggtgatttcttca
tcattgttggcattagctacactaattgatattttggtgggctcgcaattagaaaagcct
ggttttgaaagcatcactgctgaaccaaaacatgcttcaaaggctagggcaactgcaatt
tcctttgctgaaaagttattctccagtcacagatattttctagactttgtcaagtctcag
agccctgctattcggtcagctacatattcaatgctgaggagttgtattaaaaacattcct
catgcttttaatgaagagaatatgaaaactcttgcttccacaatacttggttcttttcag
gaaaaggacccatcttgtcattcatcaatgtgggatgcaatgctactattttctaagaga
tttcctgacagttggagatctgtgaatgtgcagaaaatcttactaaatcggttttggcat
tttcttaggaatgggtgttttggatcacaacagatttcttatccaagtttggtcctcttt
ttagactctctgcctcctaaagaaatagagggtgagaaattttttctcgaatttttccag
aatttatgggtaggaaggaacccatcaaatccttcaaatgcagatcgagtagcgtttttc
caggcatttaaagaatgcttcctttgggggttacataatgcatcaagatattgtaatgga
gtggatgccattcatcattttcgagtcactctaattgacagtgtccttgtaaagcttttt
tggcatgagtacatgtcattttccagctcaaaaaatcaggatgtagtgcgctgggggaat
tccaaggatccttctgagagcagcactcaactggttcacaaaagggcaatggaaaaacag
aatattaaatatccaaaaagttatgcacaagatctggggaagtgcattattgaaatcctt
tcaggcatttatttgctggatcacgatctactctctgccttctgttcaacatttcaggag
aactgcctggagatagtgaagcaaactgagaatagagaaaaaagtgagaatgtagaacag
attgtcaaatttttattattggtggagcaatatgcagttctaaaagatgaaacttggccc
ttgattcatttagtgggaccaatgttatcaaagtctttcccattgattagatcacttgcc
tcaccagatgctgtgagacttttctcagttgcagtttctgtatttggaccacgcaagata
atccaagaacttatatgcaataaggcactttcttttggccatctctctcatgatggggga
gaaaaattgggccaagaggattttttgcaagtattcaaggaattatttactccttggtgt
ttgcttggacatgattcctctatcagtgctcaactagatctcttgcttgcattatttgaa
gatgaatcttttgctgagcagtggtgtatggttatcacatatgcaacaaagctagaatgt
tgtggagctaagcctgggtctctagattctaaccaaatagcagttttggcaattctcatg
gaaaaagcaagagagaaacttaagaagcgaaaggtgggagtggatttcaatcatcaccaa
ggctgccagccagaccactggcatcacgagcttcttgatttagctgcagtatctgttgcc
tgttctcttcctccctatggaacttctgattctcggtttatccgggctgtccttggtggc
tcagttgaagatgatcaggcttcttttctatccagagatgcaatgatcctgatttttgag
gatgtcctcaaaaagttactgacttttataatgacctcctcttttatatgggttaaggat
gcgggttctttattggctcctacggcagtagattccatgacagaactggaatcttctgtt
aacatgctggaggcaactcagtttgctcttgaaatacttgatggtagcttcttttgctta
cagacattttgtgagggaagtgaggtagttccatgtctttcagctgcattatttattatt
ggttgggagtgtaatatggcaagagcattggataatgcatttgatgatcaatcaatggaa
ataacaaaggcaaggatgaattttggtgaagctttactttctttgcgtggtaagataaac
aagacattctggcaaagtctcagcatacccaatcagaaaaagttgggaagtattttgatt
ctgactattaggtctgccattttcaaggaagataaagtaaatgctaatgagatcacatct
ttgtgctttctgtggatggctgaagttcttgaatgtctctgtcaggaccaatatcaagag
cagaatttcttggacctgtttctagctaatagtgatgtgtggcctttgtggatcatgcca
gattctggctgtgcaaaaagatcagcctccttgaaaattaaagaaatttctattaagact
aatacatctgggagtcacaagtttgttgctataattgagaagctgatctctgcccttggc
attgatagagttgttgctggttatgtttcaaatactccaaattcaaccgaggaagcatca
aaagaactggctacctctcatttttattctcgagcctggcttgctgctgaaatattatgc
acatggaaatggcaaggaggcagtgctttaggttctttcttacctttactatgctcatat
gcaaagagtggaaattgttctctaaaggaaggcttgctggattccattgtcaacatttta
cttgatggtgctcttgtttatggtgcaagtggtgaattgagatttttcaatgtttggtcc
gcatcagatgatgaggtggaaagcattgaggagcccttcttgagagctctagtatcattc
cttattactctgttcacagaaaatatatggggaaaggaccaagctgtgatactttttggg
ctgttagcaaataaactttttattggtgaatcagtgaacgcagaatgtttgaggattttt
cctctaattttaagtgttctcattcgaccattatacaccatagagtctgatgaattgcat
agagatgctgtacccacttcttttgaggaaaatcagatatgtgatactatcaaggattgg
gtccaaagaactctatcatttccacccttaactgcatgggaaacaggacaagatatggaa
gaatggcttcagttggttctatcttgttatcctttacgtgcactgggaggatcaaaagca
ttgaatcttgagagagacatcgaccctgtagagagatctcttctacttgatttatttcga
aagcaaagacatgctggtaaatcagctgcagccagccagctgccaatggtgcagatattg
ctatcgaagttaatggcagtttcagttgggtattgctggaaagaattcaatgaagaagat
tgggagtttgtcttgtttcacttgagacggtggattgaatcggcagttgtaatgatggag
gaagtagctgaaaatgtaaatgatgtcatcattaatagacctagttctgatgacaaggaa
gttattcttaaggagcttgagcatgctgttttgcttttggactctcctcgtataaatatt
gctaggaatgccctttttgcattttctcttttctctgggcttactgaactccaaaatgca
gaagatgcagataattcaaaccccttgaggagagaaagatgggatcttgtaaaagaccga
attgtagaaggtattcttcgcctattcttttccactggtgtcactgaggccattgctagt
tcttatactgaggcttcatctgttatagcatcaacccggcttgatcatcctcacttttgg
gagttaattgctttgagcattgttaactcctcactacatgctagagatagagcagtgaga
tcaattgagctttgggggctaagcaaaggaccaattagctccttgtatgccatcctcttt
tcttccaaaccagttccttccttgcagtttgctgcttattttattcttgcaactgaacct
gtttcaaactctgccatcattagcaagggcacaagatatttggttggaaatactactgat
acttgtgatattgattcatcatctgaagaaggtatccaattgagggaggacatatcttgc
atcattgaaaggttaccatatgagattctggaagtggacttggttgcacaacagcgggta
tatgtattccttgcttggtctctgttgctatcacatctgttgtcttcaccaccatcatca
cctaccagggagagactgattcaacatatacaagagtctgctaattcaacaatattagat
tgcattttccaacatatacctttggaactaagctcggcatatagcttgaagaagaaagat
atagagattcctgctgagttatcagaggctgccactgccgcaacccgagccatctcaaca
ggctcattgttgttttatgtggaatcactttggccagttggacctgtgaaaatggcttca
cttgcaggtgcactattcggtttgatgcttcgtgttcttcctgcatatgtacgacagtgg
tttagtgatttacgtgaccgttctgcatcatctctaattgagtattttacaaaagcatgg
tgcagccctccgctaattgcagatgagctatctcagatcaagaaagctagttttgctgat
gagaatttttcagtgagtgtaagtaaatcagccaatgaggttgttgctacctatacaaag
gatgagacaggaatggatttagttattcgtcttcccccatcttacccattgcggtccgtg
gatgttgattgcacaaggagccttggcattagtgaagtgaagcagaggaaatggttaatg
tctatgacgtcatttgtccgtaatcagaatggagcactggctgaagctatacggatatgg
aagaacaattttgacaaggaatttgaaggtgttgaggagtgccccatctgttacagtgtg
atccatactgtgaatcatagccttccacgccttgcttgcaagacctgcaaacacaagttc
cattcagcctgcctgtacaagtggttctccacttctcacaaatcaacttgcccattgtgc
cagtctccattctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (69)   
   KEGG ORTHOLOGY (1)   
   RefGene (64)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (12)   
   Pfam (12)   
All databases (96)   

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