KEGG   Vibrio vulnificus 93U204: VV93_v1c06000
Entry
VV93_v1c06000     CDS       T03294                                 
Name
(GenBank) ATP-dependent RNA helicase SrmB
  KO
K05590  ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
Organism
vvl  Vibrio vulnificus 93U204
Brite
KEGG Orthology (KO) [BR:vvl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vvl03009]
    VV93_v1c06000
Enzymes [BR:vvl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VV93_v1c06000
Ribosome biogenesis [BR:vvl03009]
 Prokaryotic type
  rRNA helicases
   VV93_v1c06000
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Helicase_C_2 UTP25 AAA_11 AAA_30 AAA_22
Other DBs
NCBI-ProteinID: AIL69697
Position
I:complement(640783..642009)
AA seq 408 aa
MIRTFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP
ALQYLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWR
KQTMLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADNMEHKLALLKD
IINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVL
LATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR
VARYVKEDIKERFVKELRPQHKKPVFKKKKKKDDKKTSVKKKSTKKKK
NT seq 1227 nt   +upstreamnt  +downstreamnt
gtgatcagaacctttgccgatcttgatcttgacccaaacttgctgtctgccatcgaagag
atgggttacgagcgcccaactcaaattcaggcagaagcaattccacaagccctagaaggc
cgtgatattcttgcttccgctccgacaggaaccggaaaaaccgccgcatttgtcttgcct
gcgctgcaatacttgcaagattttccacgccgtaaaccaggaccagcacgcgttcttatc
ctcacgccaacccgtgagctagcgatgcaagtggccgatcaagctcgtgcgcttgccaaa
aataccagtttgaacattttcaccatcacaggtggtgttcaataccaagaacatgcggat
atccttgctaccacacaagatatcgtggtagcgacaccgggccgcttgatggagtacatc
caagcagagcgctttgattgccgcgcgatcgaatggctgatcctcgatgaagcagaccgc
atgcttgacatgggctttgctccgacagtggatcgcctatctaacgaatgtcgttggcgc
aaacagaccatgctcttctctgcaacgctagaaggcaaaggggtggaaggttttaccgcg
gatctgctgaacgatcctgcggacattgatgctgagccttcgcgccgcgagcgtaaaaaa
atcacccagtggtattaccgtgcagataacatggagcacaagctcgcgctactgaaagac
atcatcaacaaccaagcggaacgtacgattgttttcctcaaaacacgtgaacgtctggcg
gatctacgtgctcacctcgaaagcgaacaagtcaattgcgcttggattcaaggtgaaatg
ccgcaagatcgtcgtaacaacgcgattgctcgcttccgtgatggcagtgtgaatgtacta
cttgcaaccgatgtcgcagctcgtggtatcgacttgcctgacgtgtcacacgttgtaaac
ttcgacatgccacgcagtgccgatgtttaccttcaccgcatcggtcgtaccgctcgcgca
ggtaagaaaggcaacgcaatctctattgtagaagcccacgaccaaccaatgatggatcgc
gttgctcgctatgtgaaagaggatattaaagagcgctttgtcaaagagcttcgccctcaa
cacaagaagccggtgtttaagaagaaaaagaaaaaagacgataaaaaaacgtcagtgaaa
aagaaaagcaccaaaaagaaaaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (16)   

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