KEGG   Vibrio vulnificus 93U204: VV93_v1c29130
Entry
VV93_v1c29130     CDS       T03294                                 
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
vvl  Vibrio vulnificus 93U204
Pathway
vvl03420  Nucleotide excision repair
vvl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vvl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VV93_v1c29130 (uvrD)
   03430 Mismatch repair
    VV93_v1c29130 (uvrD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vvl03400]
    VV93_v1c29130 (uvrD)
Enzymes [BR:vvl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VV93_v1c29130 (uvrD)
DNA repair and recombination proteins [BR:vvl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VV93_v1c29130 (uvrD)
   MMR (mismatch excision repair)
    Other MMR factors
     VV93_v1c29130 (uvrD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PcrA_UvrD_tudor UvrD_C_2 AAA_30 AAA_12 AAA_11
Other DBs
NCBI-ProteinID: AIL71982
Position
I:complement(3213482..3215656)
AA seq 724 aa
MIDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDDKQWPARQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRENKFIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFPSVNTIRLEQNYRSTKTILEASNALIAN
NTERMGKELWTDGVEGEPISIYSAYNELDEARFAVNKIKEWQDKGGVLNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGLG
DKTLETVRFAARDRGCTLWEASIALIEEKVLTGRAAGALSRFIELINALEDDSFEMPLHV
QTDHVIKSSGLYTMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADDFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEKCLDEVRMKAQVSRPASCGRF
SQTVVKESFNETGFSLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR
LEKL
NT seq 2175 nt   +upstreamnt  +downstreamnt
atgatcgatccttcacttcttctcgatggcttgaacgacaaacagcgtgaggctgtggcc
gcacctttggaaaacttgctggtgttggcaggcgcaggcagtggtaaaacgcgcgttctt
gtgcatcgtattgcttggctaatgtcagtcgagcaggcttcgccgttttctattatgtct
gtgacctttaccaataaggcggcggcggagatgcgcggtcgaatcgaagagttgatgatg
ggcagtgcatcgggcatgtggaatggcaccttccacggtatttgccaccgcattctcaga
gcgcactatctggatgccaagctgccggaagatttccaaattattgatagcgatgatcaa
caacgtttgcttaagcgactgatcaaagcacaaaacctggatgacaaacagtggccagcg
cgccaagtcgcttggtggatcaatggcaaaaaagacgaaggattgcgccctgcgcacatc
gatgcctaccacgatcccgtgaccaaaacctatctacagttgtacaccgcctatcaagaa
gcgtgcgatcgcgcaggcttggtcgactttgcggagatcttgctgcgtgcgcatgagcta
ctgcgtgagaacaaatttatccgcgaacactatcaagcgcgctttaaacacatcttggtg
gacgagttccaagacaccaacaacattcaatacgcttggctgcgtatgatggcggggcct
gaatgccatgtgatgatcgtcggtgatgatgaccagtcgatttacggttggcgtggcgcg
aaagtggaaaacatcgaaaagttcacccttgagtttccgagcgtcaacaccattcgcctc
gagcaaaactaccgttcgaccaaaaccatcctagaagcctcaaacgccttgattgccaac
aataccgagcgtatgggcaaagagctgtggaccgatggcgtcgaaggtgaaccgatctcg
atttattctgcttacaacgaattggatgaagcgcgttttgcggtgaacaaaatcaaagag
tggcaggacaaaggcggcgtgttgaacgacgcagcgatgctttatcgcaataacgcccag
tcgcgtgtactggaagaagcgttgattcaagcgggtttgccttatcgcatttacggcggg
atgcgattcttcgagcgccaagagatcaaagatgcattgagctatctgcgcctcatcgcc
aaccgcaatgatgacgcggcctttgaacgtgtggttaatactccaacgcgtggcttaggg
gacaaaaccttggaaacggtgcgctttgccgcgcgcgatcgtggctgcacactgtgggaa
gcgagtatcgcactcatcgaggaaaaagtgttaacggggcgcgcggctggtgctctaagc
cgtttcatcgaactgatcaatgcgctggaagatgacagctttgaaatgccactccatgta
cagacagatcatgtgatcaaatcttccggcttgtataccatgtacgagcaagagaaaggc
gagaagtccaaggctcgcattgagaacttggaagagctggtcacggcgacacgtcagttt
gaaaaaccggaagaagccgaagagatgagtttgctcactgctttcttaacccatgctgct
ttggaagcgggtgaaggtcaagcggacgatttcgaagacgcggtacaactgatgacctta
cacagcgccaaaggattggagttcccattggtgtttatggtgggcgtggaagaaggaatg
ttcccgagccagatgtctgccgaagaagcgggccgcttagaagaagagcgccgtttgtgc
tacgtgggcatgactcgggcaatgcagaagctctatattacctacgctgaaatgcgtcgt
ttgtacgggcaagacaaataccataaaccatcgcgttttattcgtgagctaccagaaaag
tgtttggatgaagtgcgcatgaaagcgcaagttagccgccctgccagctgtggccgcttt
agccaaaccgtcgtgaaggaaagtttcaacgaaactggcttttcattgggttcacgtgtt
cgccatcctaaatttggtgaagggacaatcatcaactttgaaggcagtgggccacaaagt
cgcgttcaagtggcctttaatggggaaggcattaagtggttggtgaccgcttacgcgagg
ttggaaaaactgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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