KEGG   Vulpes vulpes (red fox): 112927438
Entry
112927438         CDS       T05911                                 
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
vvp  Vulpes vulpes (red fox)
Pathway
vvp03013  Nucleocytoplasmic transport
vvp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vvp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    112927438 (UPF3A)
   03015 mRNA surveillance pathway
    112927438 (UPF3A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvp03019]
    112927438 (UPF3A)
Messenger RNA biogenesis [BR:vvp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     112927438 (UPF3A)
   mRNA cycle factors
    P-body specific factors
     112927438 (UPF3A)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 112927438
NCBI-ProteinID: XP_025864577
UniProt: A0A3Q7TTI1
Position
Unknown
AA seq 482 aa
MRSEEEGVGGPGAAVPGRGPSGREKQSAGEVRFRRESPWREAEAHPASSSGGGASMGKPR
EEKTVLSKVVVRRLPPSLTEGQLEEQLRPLPAHDYFAFFAADVSLYPHLYSRAYINFRNP
EDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL
ETYCVEEEKPNANPETLLGDIEAKTRELIARRTTPLLEYIRNRKLEKQRIREEKQEERRR
RELEKKRLREEEKRKKREEERCKRKEADREKRAAEREVRIKLLKKPEKGQEPTEKPKERG
EEVDVGDGKQEMSLSYAVLKPMPLESSLEKPRKKSQNDSDKEQREMERRLRAKEPETQRC
HMDGSMHRVHCEFNKFARRNEEEPRWGKGVPPDRGKKGNQDSSIPVEAAEWPGREHKSEG
GLASSMECPGNKDLPALQLYQPEAHIRAQESGGGISVEGCDGSRGEAEDLALAGSQKSEE
AG
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgcgctcagaggaggagggggtcggaggccctggggcggcagttcctgggcgcggcccg
agcgggagggagaagcagtccgctggggaagtccggttccgccgggagtcgccgtggcga
gaagcagaggcacacccagcctcgtcctctggcggtggggccagtatgggcaaacctcgc
gaggagaagacggtcctgagcaaggtggtggtccggcggcttccccccagcctcaccgag
gggcagctggaagagcagctgcgcccgctgccggcgcacgactacttcgcgttcttcgcc
gccgacgtgagtctttatcctcatctctactcaagagcatacattaattttagaaatcct
gaggacatccttctttttagagatcgttttgatggctatatcttcattgacagtaaaggc
ctagaatatcctgcagtggtagaatttgccccattccagaagatagccaaaaagaagcta
aagaaaaaagatgccaaaactggaagcattgaagacgatccagaatataagaagtttttg
gaaacttactgtgtggaggaagagaaacctaatgcgaatcccgaaactcttctgggagac
atagaggcaaagacaagagaacttattgctagaagaactacacctcttttggaatatatt
agaaatagaaaattagagaagcagaggattcgagaagagaagcaagaagagcgaaggagg
agggaactagagaagaagcgtttacgggaagaagaaaagaggaagaagagagaagaggag
aggtgtaagaggaaagaggcagacagagagaagagagctgctgagagagaagtaaggatt
aagcttcttaagaaaccagaaaaggggcaggaaccaactgagaagccaaaggaaagagga
gaggaagtggatgtaggagatgggaagcaggagatgagtcttagctatgctgtcctgaag
cccatgcccttggagagctcgctggagaagcccaggaaaaagtcacagaatgatagtgac
aaagagcaaagagagatggagagaagacttcgagcaaaggagcctgagacacaaagatgc
cacatggatggcagcatgcacagagtgcactgtgagtttaacaagtttgcaaggagaaat
gaagaagagccgagatgggggaaaggagtacccccagaccgagggaagaaggggaaccag
gacagtagcatccctgtggaggcagcagagtggcctgggagagaacacaagagtgaaggt
ggcctagcatccagcatggagtgccccggaaacaaggatttgccggccttgcagctgtac
caaccagaagctcacatccgagcacaagaaagtggtgggggaatttctgttgagggctgt
gatgggagcaggggcgaggctgaagatttggcactggctggttcccagaagagtgaagag
gcagggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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