KEGG   Vibrio vulnificus CMCP6: VV1_1459
Entry
VV1_1459          CDS       T00108                                 
Name
(GenBank) RNA polymerase associated protein rapA
  KO
K03580  ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vvu  Vibrio vulnificus CMCP6
Brite
KEGG Orthology (KO) [BR:vvu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvu03021]
    VV1_1459
Transcription machinery [BR:vvu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     VV1_1459
SSDB
Motif
Pfam: RapA_C Tudor_RapA Tudor_1_RapA Helicase_C SNF2-rel_dom ResIII DEAD AAA_34 Flavi_DEAD COG2
Other DBs
NCBI-ProteinID: AAO09899
UniProt: Q8DCG1
Position
I:1445775..1448684
AA seq 969 aa
MAFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYASNDAPVTRVVFNVGDV
VECQEGWSLKVEQVVEENGLYTYLGTREDTEETGVALREIFLSNQIRFNKPQDKMYAGQI
DRMDNFVLRYRALKNQYEQHRSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLLGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFA
ESDNPFDTQQYVLCSLDFLRKSRKRFEQALEAEWDLLVVDEAHHLEWSQDKPSRGYQVVE
GLAERTPGVLLLTATPEQLGRESHFARLRLLDSDRFYDYAAFVEEEAQYAPVADAITALF
SGVKLADEAKNQITELLSEQDVEPLFRIIESNADEESKAIARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPVRNVHLLPMPIPTQYTTSMRVSGMIGGKLAPEARAMKNLYPEEIFQEFE
GEESSWWQFDCRVNWLLEKLKAQRSEKVLVIASRASTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQKRDIDIHVPYLQGTAQEVLARWFNEGLNAFAETCPTGRTVYDQVSDQLIEMLASGS
NEALDDVIAESAKLNQALKADLEQGRDRLLEMHSNGGEKAQQIVAEIAAKDGDTNLVSFA
LSLFDTIGLNQDDKGENAIVVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMIQGGIDLLMSEGVGTCAVSLLKNKALPVGTLLLELIYAVDAQAPKRSGIGRFLPRT
PIRLMMDARGNDLSGQVEFESFNRQLSPVNRHLASKLVSSVQNDIHRLIEAGDQLVVENV
EAIRQQAQQEMQQSLNSELERLQALKAVNPNIRDEEIEAIDAQIKELNGYISKAQFQLDS
LRLIVVSHN
NT seq 2910 nt   +upstreamnt  +downstreamnt
atggcatttgctttggggcagcgctggatcagcgatacggagagcgatttgggtttaggt
acggtagtggcgttagatgctcgcaccgtgacactgatgtttgcagcatcagaagagaac
cgagtttacgccagtaacgatgcgccggtaacccgagtagtttttaatgtcggtgatgtg
gttgagtgtcaagaaggttggtcactcaaagtggaacaagtagtggaagagaacgggtta
tatacctaccttggcacgcgtgaagacactgaagaaactggtgttgcactgcgtgaaatc
ttcctgagcaaccaaattcgttttaataaaccgcaagacaaaatgtacgccggtcaaatc
gatcgcatggacaactttgtgttgcgttaccgcgcactcaaaaatcaatatgaacaacac
cgcagtccaatgcgcggcctctgtggtatgcgtgcgggcttgatccctcatcagctctac
attgcccacgaagtgggtcgtcgtcatgcgccacgcgtattgctggcggatgaagtgggt
ttgggcaaaaccattgaagcgggcatgatcattcaccagcaagtgctgcttggccgtgct
gaacgcatcctgattgtggtgcctgaaacgttgcaacaccagtggttggtggagatgatg
cgtcgtttcaatctgcatttctctatctttgatgaagaacgctgtgtcgaagcgtttgcc
gagtcagataacccatttgatacccagcagtacgtactgtgttcactcgatttcttgcgt
aaaagtcgcaagcgttttgagcaagcgctcgaagccgaatgggatctgctggtggtggac
gaagcgcaccaccttgagtggagccaagacaaacccagccgtggctaccaagtggtagaa
ggcttagcagaacgcacacccggtgtgttgctgttgaccgcaaccccggaacagcttggc
cgtgagagtcactttgcccgcttacgccttctcgattcagaccgtttctacgactacgct
gcgtttgttgaagaagaagcgcaatacgcgccagttgcggatgcgattaccgcgttattc
tccggcgtgaagctggcggatgaggcgaaaaaccaaattaccgaactgctttctgagcag
gacgttgagccgctgttccgcatcatcgaaagtaatgctgacgaagagagcaaagcgatc
gctcgccaagagttgattgataatttgatggaccgccacggcactggccgtgtcttgttc
cgtaacacccgtgcggcgatcaaaggcttccctgtgcgtaatgtgcacctgttgccgatg
ccgatcccaacccaatacaccacctcgatgcgtgtttcgggcatgatcggtggcaagttg
gccccagaagcgcgtgcgatgaaaaacctctacccagaagagatcttccaagaatttgaa
ggggaagagtcgagctggtggcagtttgactgccgagtaaactggttgctggaaaagctg
aaagcgcaacgcagtgagaaagttttagtgatcgcttcgcgtgccagcacggcattgcaa
cttgaacaagcgttgcgtgagcgtgaaggcattcgtgccaccgttttccatgaaggtatg
tccatccttgagcgcgacaaagccgcagcttacttcgcgcaagaagagggcggcgcacag
gtgttgatttgtagtgaaatcggctctgaaggtcgtaacttccaatttgctaaccagttg
gtgatgtttgacctgccattcaacccagatttgcttgaacagcgtattggtcgtttggac
cgtattggtcaaaaacgtgatatcgatattcatgtgccttacctgcaaggaaccgcacaa
gaagtcttagcgcgttggtttaatgaaggcctcaatgcatttgctgaaacttgcccaaca
ggccgcactgtctatgaccaagtctccgatcaactgatcgagatgttggcatcgggttcc
aatgaggcgttggatgacgtgattgcggaatcggccaaactgaatcaagcgttgaaagcc
gatcttgagcaagggcgtgaccgtctgttggaaatgcactccaacggtggggagaaagcg
cagcaaatcgtggcggaaattgccgccaaagatggcgataccaacctagtgagttttgca
cttagcttgtttgacaccattggtttgaaccaagatgacaaaggtgaaaatgccatcgtg
gtgacgccgtcggagcacatgatggtgccgagctacccaggtttgccgtacgaaggcgcg
acgattaccttcgatcgcgatacggcgttgtcacgcgaagacatgcactttatcagttgg
gaacacccaatgatccaaggcggcattgatttgctgatgagtgaaggggtgggcacctgt
gccgtttctctgctcaagaacaaagcattgccggtcggcactttgctgctagagctgatt
tatgcggtggacgcgcaagcgccgaaacgcagtggtattggccgcttcttacctcgcacg
ccaattcgtttgatgatggacgctcgtggcaacgatctctctggtcaagtggagtttgaa
agctttaaccgtcaattgagcccagtgaatcgccatttggcgagcaaattggtttcgtcg
gtgcaaaacgatatccatcgtttgattgaagccggtgaccagttggtggtggaaaatgtc
gaagcaattcgtcagcaagcacagcaagagatgcagcagagtcttaatagtgaacttgag
cgtctgcaagcattgaaagcggtcaacccgaacattcgtgatgaagaaattgaggcgatt
gacgcgcaaatcaaagagttgaacggttacatctcgaaggcgcaattccaattggattca
ctgcgtctgattgtggtgagccacaactga

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