KEGG   Wallemia ichthyophaga: J056_003640
Entry
J056_003640       CDS       T03457                                 
Name
(RefSeq) Glucose-repressible alcohol dehydrogenase transcriptional effector
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
wic  Wallemia ichthyophaga
Pathway
wic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J056_003640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:wic03019]
    J056_003640
Enzymes [BR:wic01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     J056_003640
Messenger RNA biogenesis [BR:wic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     J056_003640
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     J056_003640
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4
Other DBs
NCBI-GeneID: 20376592
NCBI-ProteinID: XP_009267131
UniProt: R9AIB8
Position
Unknown
AA seq 612 aa
MFLNKFYQPIQINQQNNIINPFWQEQLVRAEAIRSSSSPHHRARAAALAQRGQQSSAIAI
LDPSRRISTPKQNSATLNQQSPTTPNAHPSASHVPSNNSDKKSNSSWMALDMGGMQLKSL
SPSLFTYQFVTNLFLNHNNLSFIPPEIFKLNQLVLLDLSGNTLSSLPPELGLLSRLRELL
LFDNNLVSIPSEFGSLYQLEFLGIDGNPLADSFRQLIQKEGTPALISYLRDSCPVTTGPP
EREWLAMETDLPSPKEDSPPPETFSLLCYNILCDKYATSQMYGYTPSWALNWDYRKEILL
QEIMGFSADIVCLQEVDIEQYEDFFLNHLSHHDYRGVYSQKSRAKTMSENEKKRVDGCAT
FFKGSKYQLIESEVIEFSQVALQRSDFAKTEDMFNRVLTKDNIANVALLENIESGTRLIV
ANVHIHWNPEFRDVKLVQVAILMDEIEKISKRFSTLPPKLNVQSGKKGPVYTDMSKIPLI
VCGDFNSVPNSGVYEFLGKGHVERDHEDFMHHQYGAFTTEGMKHKFALKSSYANIGELPM
TNYIPGFEEVIDYVWYTQNTLSVVGLLGEVDQSYLNRIVGFPNVHFPSDHLSLFTEFRIR
PPSHVTDVPRQK
NT seq 1839 nt   +upstreamnt  +downstreamnt
atgtttttaaataaattttatcagccaattcaaattaatcaacaaaataatattataaac
cctttctggcaggagcaactcgtcagagccgaagccatacgatcatcctcttcaccacat
catagagctagagctgctgctttggcccaacgcggtcaacaatcttctgctatagctatc
ctcgatccttcaagacgtatatcaacaccgaagcagaattctgcgactctcaatcaacaa
tcacctacaactccaaacgctcatccatcagcttctcatgtcccttcaaacaactctgac
aaaaagtcaaattcaagctggatggctttggatatgggtggaatgcaattgaaatcactc
tcaccaagcttattcacttaccaattcgtaaccaacctcttcctcaaccacaacaacctc
tcttttattccccctgaaatctttaaactcaatcaactcgttcttcttgacttatcaggt
aacaccttgtcctctcttccacctgagctaggtctcctttctcgccttagagaacttctt
ctctttgacaacaacctcgtttcgataccttccgaatttggttccctttaccaactcgaa
ttcctcggcattgacggtaaccctctcgctgactcttttaggcaattgattcaaaaggaa
ggtactcccgctctcatttcataccttcgcgattcttgtcctgtcactactggtccccct
gaacgtgaatggcttgcaatggaaactgaccttccttctcctaaagaagattctcctcct
cctgaaactttctctttattgtgctacaatatcctctgtgataagtacgctacttctcaa
atgtacggatacaccccttcatgggctttgaattgggattatagaaaagaaattctcctt
caagaaattatgggcttttcagctgatattgtttgtcttcaggaggttgacattgaacaa
tatgaagatttcttcttaaatcatctctctcaccatgattatagaggcgtttactctcaa
aaatctcgtgcaaagaccatgtctgagaatgaaaagaagagagtcgatggttgcgcaact
ttttttaaaggctcaaagtaccaattgatcgaatctgaagtcatcgagttctctcaagtc
gctttgcagcgatcagatttcgcaaagactgaagatatgttcaatagagttcttactaaa
gataatatcgcaaacgtcgctttgttggaaaacatcgaatctggcacgagattaatcgtt
gccaacgtccatatacactggaatcccgaattcagggatgtaaaactagttcaagttgca
atcttaatggatgagattgagaaaatatcaaagagattctccactttgccacctaagttg
aacgtacaatcaggcaagaagggaccagtgtacactgacatgtctaagattcctctcatt
gtctgtggtgactttaacagtgttccaaattctggggtctatgaattcttaggcaaggga
cacgttgaaagggatcatgaagactttatgcatcaccagtacggtgcatttaccactgaa
ggcatgaaacacaagtttgcactcaagtcaagttacgcaaacattggagagctgccgatg
acaaactacatacctggattcgaagaggtcatagattacgtctggtatactcaaaacaca
ttatctgtcgttggactattgggtgaagttgatcagtcttaccttaacaggattgttggt
ttccctaacgtacacttcccttcagatcacttgtctttattcacagagtttagaatccgt
cctccatcgcatgttacagatgtacctcgacagaaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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