KEGG   Wenzhouxiangella marina: WM2015_1830
Entry
WM2015_1830       CDS       T04011                                 
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
wma  Wenzhouxiangella marina
Pathway
wma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:wma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WM2015_1830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:wma03019]
    WM2015_1830
   03009 Ribosome biogenesis [BR:wma03009]
    WM2015_1830
Enzymes [BR:wma01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     WM2015_1830
Messenger RNA biogenesis [BR:wma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     WM2015_1830
Ribosome biogenesis [BR:wma03009]
 Prokaryotic type
  rRNA processing factors
   WM2015_1830
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DUF4901
Other DBs
NCBI-ProteinID: AKS42197
UniProt: A0A0K0XX45
Position
2185867..2188542
AA seq 891 aa
MKRMLINATQPEEVRVAIADGQALLDLDIEVPAQEQKKSNIYKGRITRVEPSLDACFVEF
GSERHGFLSMKEIAPEYFNDESRKQFDAGQRVDIKDAVKAGQEVIVQVDKEERGTKGAAL
TTYISLAGRYLVLMPNNPRAGGVSRQISRDDRKELLDTLKMIEVPDGMGLIVRTAGVGRE
QEELQWDLDYLLQLWEAIKTASQARQAPFLIYQESKLIIRALRDYLREDIGEILIDDDQV
FEDAREFMQQVMPHNLRKLKAYRDAIPLFSRYQIESQIESAFSREVRLPSGGALVIDHTE
ALLSIDINSARATKGSDIEETALQTNLEAAEEIARQLRIRDLGGLIVIDFIDMMSKDAQR
QVENRLRDAMRMDKARVQFGRISRFGLLEMSRQRLRPSLGESSYITCPRCIGMGSIRSIE
SLALSILRLAEEEAMKDNTARVLIQAPIAVANFLLNEKRSVMAEIERRNKLPITVVANEN
LETPRFEVQRLRSAEDIDEPSYSLATDEVEANSGYQRSEQMQPPPKPAAQAAVSGVRPAS
PAPLRKSEDRGGFFAWLKAFFASLFSGSDEDRRSKNAAKDPQGGRGRKGQFSRDHHRKRH
QGAGQDDDGSPGAQKKKKKKKKKRSAKKDEQNGNAGNQGNNNAQADGDSGTPDDQKPRKK
RRRRGGKKRRSRAANRDEAGNNGNDNGGNAGAQGGDGGNRGQSDGDKPRGKDKRGGSEDA
ASDAKPSGTGETPRAPSGQQGARNEASSSANSSSASAPVTPSSAEAAKPASQASESGQAS
SDKPAPARPAPAAQPSPASGEAKASGSAAATTDRSGEAGRERTNPPQDSKPSPAPAERRS
ESNAPSSPAAQSTSERPSRPSEQPKAVRGDDGIYRLTESSKPEGSSGSDKG
NT seq 2676 nt   +upstreamnt  +downstreamnt
atgaaacgcatgctgatcaacgccacgcagcctgaagaggtgcgcgtggcgattgccgat
ggccaggccctgctcgacctggacatcgaagttcctgcccaggaacagaagaaatccaac
atctacaagggacgcatcacccgggtcgagcccagcctcgacgcctgcttcgtcgagttc
ggctcggagcgccacggtttcctctccatgaaggaaatcgcccccgagtacttcaacgac
gaatcccggaagcagttcgatgccggccagcgagtcgacatcaaggacgccgtcaaggcc
ggccaggaagtcatcgtccaggtcgacaaggaagaacgcggcaccaagggcgcggccctg
accacctacatcagcctggccggtcgctacctggtcctgatgcccaataatcctcgtgcc
ggtggtgtgtcacgccagatctcgcgcgatgaccggaaggaactgctcgacaccctgaag
atgatcgaggtcccggacggcatgggcctgatcgttcgcacggccggcgtcggtcgcgaa
caggaagaactgcagtgggacctcgactacctgctgcagctctgggaagccatcaagacc
gccagccaggcgcgccaggcaccgttcctgatctatcaggaaagcaagctgatcattcgc
gctctgcgcgactacctccgcgaagacatcggcgaaatcctgatcgacgacgatcaggtc
ttcgaggatgcccgcgaattcatgcagcaggtgatgccgcacaacctgcgcaagctcaag
gcctatcgcgacgccatccccctgttctcccggtaccagatcgaatcgcagatcgaatcg
gccttctcgcgtgaggttcgcctgccctccggaggcgccctggtcatcgaccacacggaa
gccctgctgtcgatcgacatcaactccgcccgcgccacgaagggttcggacatcgaggag
acggcgctccagacgaacctggaagcggccgaggaaatcgcgcgccagctgcgtattcgc
gaccttggcggactgatcgtcatcgatttcatcgacatgatgagcaaggatgcccagcgc
caggtcgagaatcgcctgcgcgacgccatgcgcatggacaaggcccgcgtccagttcggt
cgcatctcgcgcttcggactgctggaaatgtcccgccagcgcctgcgcccttccctgggt
gaatccagctacatcacctgcccgcgctgcatcggcatgggctcgatccgttcgatcgaa
tccctggccctgtccatcctgcgcctggccgaggaagaggccatgaaggacaacacggcc
cgggtgctcatccaggcgccgatcgccgtcgccaatttcctcctcaatgaaaagcgctcg
gtgatggccgagatcgagcggcgcaacaagctgccgatcaccgtcgtcgccaacgagaac
ctggagacgccgcgcttcgaggtgcagcgactgcgctcggccgaagacatcgacgagccg
agctacagcctggccacggacgaggtcgaggccaactcgggctatcagcgcagcgagcag
atgcagccgccgcccaagcccgccgcccaggccgcggtctccggcgtccgccccgccagc
ccggcgccactccgcaagagtgaagacagaggcggcttcttcgcctggctgaaggccttc
ttcgcgagcctgttctcgggcagcgacgaagaccgccgttcgaagaacgcagcgaaggac
ccgcaaggcggccgcggccgcaagggccagttctcccgcgatcatcatcgcaagcgccac
cagggggccggccaggacgacgacggcagcccgggtgcccagaagaagaaaaagaagaaa
aagaagaagcgctcggccaagaaggacgaacagaacggcaatgccgggaaccagggcaac
aacaatgcccaggctgacggtgattcaggcacccctgacgaccagaagccgcgcaagaag
cgccgccgtcgtggcggcaagaagcgccgctctcgtgccgcgaatcgcgacgaggccggc
aataacggcaatgacaatggcggcaacgccggcgcccagggcggcgacggcggcaaccgt
ggtcagtccgatggtgacaagccgcgcggcaaggacaagcgcggcggcagtgaagatgcc
gcaagcgacgcgaagccatccggcactggtgagaccccacgcgccccatcgggtcagcag
ggggctcggaacgaagcttcgtccagcgccaactcctcgtcggccagcgcgccggtaacg
ccgtcgagcgccgaggcagcgaaaccggccagccaggcctctgaaagtggccaggcctcg
agcgacaaaccggcgccggctcgccctgccccagcagctcagccgagtcctgcgtccggc
gaggccaaggccagcgggtcggcagcagcgacgaccgaccggtccggcgaggcaggccga
gagcgcaccaatccgcctcaggactcgaagccgagccccgcgcccgcggagcgtcgcagc
gaatcgaatgcgcccagcagcccggccgcgcagagcacgagcgagcgccccagccgcccg
agcgaacagccgaaagcggttcggggtgacgatggcatctaccggttgacggaatcctcg
aagccagagggctcgagcggatcggacaagggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (54)   

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