KEGG   Wallemia mellicola: WALSEDRAFT_31811
Entry
WALSEDRAFT_31811  CDS       T03142                                 
Name
(RefSeq) polyadenylate binding protein
  KO
K13126  polyadenylate-binding protein
Organism
wse  Wallemia mellicola
Pathway
wse03015  mRNA surveillance pathway
wse03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:wse00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    WALSEDRAFT_31811
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WALSEDRAFT_31811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:wse03019]
    WALSEDRAFT_31811
   03041 Spliceosome [BR:wse03041]
    WALSEDRAFT_31811
Messenger RNA biogenesis [BR:wse03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     WALSEDRAFT_31811
   mRNA cycle factors
    Stress granule specific factors
     WALSEDRAFT_31811
Spliceosome [BR:wse03041]
 Complex C
  Other components
   Complex C specific factors
    WALSEDRAFT_31811
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 Nup35_RRM RRM_occluded DUF5846 PNPase
Other DBs
NCBI-GeneID: 18471371
NCBI-ProteinID: XP_006957264
JGI: Walse1_31811
UniProt: I4YF53
Position
Unknown
AA seq 637 aa
MSQAPAPSEVQQDAQAPAAQAQPAADQSNNNNGTPQSASLYVGELDPTVTEAMLFEIFNM
IGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQLNYSLIKNRACRIMWSQRDPAL
RKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGNSRGYGFVHYENGESAS
AAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDEKFKQILE
PYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFAARAQKKNER
EEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRDEKGT
SKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQRRDVRRQQLESQIAQRNQLRLQ
HQAAAGVPISGFMPGAPMYYQPPPGAYPGGRSMYGQPGFAPPRPRGYPAGQQVPGMPIPS
PYGPPPQGYMPANYRPARPARANGAQVQGGSPTANNVRPAVPASGPRPAGVPVRPAQGAA
KPAKQEAGGPLSASVLANAPPAEQKQMLGEALYPKIFNIQPELAGKITGMLLEMENSELL
FLLENEEALKSKVDEAIAVLNEYQGDEEAAPAAEATA
NT seq 1914 nt   +upstreamnt  +downstreamnt
atgtcccaagccccagctccatctgaagttcaacaagatgcacaagcaccagctgctcaa
gctcagccagcggctgatcaatcaaacaacaacaatggcactccacaatctgccagcttg
tacgtaggtgaattagaccctaccgtcactgaagctatgttgttcgagatcttcaacatg
attggtccagtcgccagtatccgtgtttgcagagacgctgtcactagacgttccttagga
tacgcctacgtcaactatctcaacctccaagacggtgaacgtgcgcttgaacagctcaac
tactccctcataaagaacagagcttgtcgtatcatgtggtctcaacgtgaccctgcgctc
cgtaagaccggccaaggcaacatctttatcaagaaccttgatgaggctattgacaacaag
gcacttcacgacacctttgctgccttcggtaacgtcctctcatgtaaggtcgccaccgat
gaaaatggcaactcccgtggttacggtttcgttcactacgagaacggtgaatccgcctcc
gctgctattcaacacgtcaatggtatgcttcttaacgataagaaggtctacgtcggtcac
cacgtctcaaagaaggaacgtcaagcaaagattgatgaacaaaagtctcaattcactaat
gtcttcatcaagaaccttgacgtctctgttgatgatgaaaagttcaagcaaattcttgaa
ccatacggtgaaatactctcagcagtcgttcaaaaggatgagcaaggcaactcacgtggt
ttcggtttcgtaaactacaagaaccacgaagaggcagctaaagcagttgaatcactcaat
gaagttgaagttgacggcaagaaaatctttgctgctcgtgctcaaaagaagaatgagcgt
gaagaagaacttcgcagaaactacgagcaagctaaattagaaaagttggctaaatatgca
ggtgttaacttatacgttaagaacttggatgacgactttgatgatgaaagattagtcggt
gaattcgaaccatttggtaccatcacctctgccaagattatgagagatgaaaagggtaca
tcaaagggcttcggtttcgtttgtttctcttcaccagatgaagcaaccaaagcagtttct
gaactctctggtaagatgattggatctaagccactttacgtttcattagcacaacgtaga
gatgttagacgtcaacaattagagtcacaaatcgctcaacgtaaccaattgagattacaa
catcaagctgctgcaggtgtaccaatctcaggatttatgccaggtgcaccaatgtactac
caaccaccaccaggtgcttacccaggtggtagatcaatgtacggtcaaccaggtttcgct
ccaccaagaccaagaggttacccagcaggtcaacaagttccaggtatgccaattccatca
ccatatggaccaccaccacaaggatacatgccagcaaactacagaccagcaagaccagct
cgtgcaaacggtgcacaagttcaaggtggctcaccaactgctaacaacgttagaccagct
gtaccagcatcaggtccaagacctgccggtgtaccagttagacctgcccaaggtgctgct
aagccagccaagcaagaagctggtggcccattaagcgcatcagttttagcaaacgcacca
ccagctgaacaaaagcaaatgctcggtgaagcactctaccctaagatcttcaacatccaa
ccagaattagccggtaagatcacaggtatgttgttagaaatggagaactctgaactttta
ttcttgctcgagaatgaagaggcattgaaatcaaaggttgacgaagccatcgccgtactt
aacgagtaccaaggtgatgaagaggctgcaccagctgcagaggcaactgcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (164)   
   KEGG ORTHOLOGY (1)   
   RefGene (159)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (181)   

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