KEGG   Xanthomonas albilineans: XALC_1167
Entry
XALC_1167         CDS       T01160                                 
Symbol
hfq
Name
(GenBank) probable protein hfq (host factorIprotein)
  KO
K03666  host factor-I protein
Organism
xal  Xanthomonas albilineans
Pathway
xal02024  Quorum sensing
xal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XALC_1167 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    XALC_1167 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xal03019]
    XALC_1167 (hfq)
   03036 Chromosome and associated proteins [BR:xal03036]
    XALC_1167 (hfq)
Messenger RNA biogenesis [BR:xal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     XALC_1167 (hfq)
Chromosome and associated proteins [BR:xal03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    XALC_1167 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: CBA15682
UniProt: D2UDM5
Position
1365965..1366240
AA seq 91 aa
MSKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAIS
TVVPARNVRVGPGGGYVQQNEGGSAIDDEAE
NT seq 276 nt   +upstreamnt  +downstreamnt
atgtccaaggggcaatccttgcaagatcctttcctcaacgcgttgcggcgcgagcgggtg
cctgtgtcggtgtatttggtcaacgggatcaagttgcaggggacgatcgagtcgttcgac
cagttcgtggtgctgttgcgcaacaccgtgagccagatggtctacaaacacgccatttcc
accgtggtaccggcacgcaacgtgcgtgtggggccgggcggcggttatgtgcaacagaat
gaaggtggcagtgcgatcgatgacgaagccgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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