KEGG   Xanthomonas albilineans: XALC_1617
Entry
XALC_1617         CDS       T01160                                 
Symbol
rne
Name
(GenBank) probable ribonuclease e protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
xal  Xanthomonas albilineans
Pathway
xal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XALC_1617 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xal03019]
    XALC_1617 (rne)
   03009 Ribosome biogenesis [BR:xal03009]
    XALC_1617 (rne)
Enzymes [BR:xal01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     XALC_1617 (rne)
Messenger RNA biogenesis [BR:xal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     XALC_1617 (rne)
Ribosome biogenesis [BR:xal03009]
 Prokaryotic type
  rRNA processing factors
   XALC_1617 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: CBA16116
UniProt: D2UDR7
Position
1907041..1910379
AA seq 1112 aa
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLTIPDDMGVIIRTAGVGRDAEELQ
WDLEYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTVEMYGDAK
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLQTPH
YEVTRLRENELGEESTKPSYQRGTPRKLPVHALTKAQLNIPPAPAVTHVQHSQPAPLRET
AEATTAAPALMPPPPSVTATPAIGIVGWLKRIFGASENQAQAPTAPEPAQRQRPQDGNRN
RNGDRHDRNARRNGGQGGNAGRGNGGGNGRRTGNNGAVQSGGQQNPSPKLPRNEQTSQQA
KQQQTPKPPKQQQQNPPRQPKPQQEASQAAVQNEKSQRQARTDENAKQVASVPVAPVALA
QDAATFAPPVAVGDIPQRQEAQAVTSLAPLVAATPHANGDEHESVLETGQSVLASENSDG
DDVNGEAGGRRRRGRRGGRRRRRGNGETGVIGEGEVAGLDDIDLNAADNDGETTPAPNRS
QPEFDFDDDVTVDSTNVKPQSPFKETPAPQEKREPQPRRERPAIDTQAATHQTATASSAF
VDNAPPQGVTLTQAIVAAPPPTHETAEGIAQLTTAMGTADHAASDASGAHTDAASATLIV
DKTTPTMRMESAAEQLPAIAPTTASDAAPTAPVKMIEQPKAADTPAPAAGVVATPMRGAD
PFGMTAPASAATRETATNASQRHDDPAPVKPTYAPVQTTLLDVLKPNTHETVPRHNVGTT
STPVAGTTPVVVQPSRKTEGEDDENKEQQDRS
NT seq 3339 nt   +upstreamnt  +downstreamnt
atgaaacgtatgctgatcaacgccacgcaggcagaagaactgcgtgtggctatcgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacagaagaaatccaac
atctacaagggccgcatcacccggctcgaaccctcgctggaagcagccttcgtcgagtac
ggcggcgagcgtcacggtttcctgccgctgaaagaaatctcccgcgactacttccaggcc
ggcgtcgaccacaataaggcgacgatccgcgaactgttgcgcgaaggccaggaagtcgtc
gtgcaggtggacaaggaagagcgcggcaacaagggcgctgctctgacgaccttcatctcg
ctggccggccgctacatggtgctgatgcccaattcacccagtgccggcggcgtctcccga
cgcatcgagggcgaagaccgcgctgcgctgaaggaagcactggacaagctgaccatcccc
gatgacatgggagtgattatccgcacagccggtgtcggccgcgacgccgaagaactgcag
tgggacctggaatacctgctgcaggtgtggaaatcgatcgccgaggccgcactggccaag
ccggctcccttcctgatctaccaggaatcacggctgatcattcgcgccctgcgcgattac
ctgcgtgccgatatcggcgagatcctcgtcgataccgtggaaatgtatggcgatgccaag
gagttcatgcaacaggtgatgccgcagagcctgcgcaagctcaagcactacaccgatgac
atcccgctgttcaaccgcttccagatcgagtcgcagatcgaggccgcctacgagcgcagt
gtgcgcctgccttccggcggctcgatcgtcgtcgaccagaccgaggcactgactgcggtg
gacgtcaattcctcgcgcgcgaccaagggcagcgacatcgaagacaccgcgttccagacc
aacctggaggcggccgaggaggtcgcgcgccaattgcgcctgcgcgatcttggcggtctg
gtggtgatcgacttcatcgacatggcctccaacaagcatcaacgcgaggtcgaaaatcgc
ctacagaacgcgctcaagtacgaccgcgcgcgcgtacagattggccgcatctcgcgcttt
ggcctgttggagatgagccgccagcgactgcgtccgtcgctgggcgagtccagccagatc
gtatgcccgcgctgtgatggccatggccgcatgcgcagcgtcgagtcgttgtcgctgtcg
atcattcgcgtcgccgaagagcacgcgatgaaggaaaacaccgggcaagtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgaaaagcgccgagcactcagcgagatc
gagaagcgccacgacgcgccgatcgtcatcgtcgcagacgagcaattacaaaccccgcac
tacgaagtgactcgcctacgcgagaacgaactgggcgaggaaagcaccaagccaagttac
cagcgcggtacgccacgcaagctaccggtgcatgccctgaccaaggcacagctcaacatt
ccgcccgcgcccgcggtaacccatgtgcagcactcgcagcctgccccattacgcgaaacg
gccgaggcgacgaccgccgcaccagcactgatgccgccccccccttcggtaactgccacg
ccagcgatcggtatcgtcggctggctgaagcgtatcttcggcgccagcgaaaaccaggcg
caggcaccaactgcacccgaaccagcacagcgccaacgtccgcaggatggaaaccgtaac
cgcaacggcgaccgtcatgaccgcaatgcacggcgcaacggtggccagggcggcaacgcg
ggacgtggcaacggcggtggcaacgggcgccggactggcaacaacggcgcggtacagagc
ggtggccagcagaatccgtcgcccaagctcccacgcaacgagcagacgtcgcagcaagcc
aagcagcagcagactccaaagccgccgaaacagcaacagcagaacccaccacgccagcct
aaaccacaacaggaagcgtcccaggctgcggtgcagaacgaaaagtcgcagcgtcaagcg
cgtaccgacgaaaacgctaagcaggttgcgtcggtccccgtggcgcctgtcgcgctggca
caggatgccgccaccttcgcccctcctgtcgcggtcggtgatataccgcagcgccaagag
gctcaggccgtaaccagcctggccccactcgtcgctgccaccccacacgccaacggcgac
gagcacgaaagcgttctggaaaccgggcagtccgtgctggcaagcgagaacagcgatggg
gacgacgtgaacggcgaggccggtggccgccgccgacgcggacgccgcggcggacgccgc
cgtcgacgcggcaacggtgaaacaggcgttatcggcgagggcgaggttgctggtctagac
gatatcgatttgaatgctgcagacaacgatggcgagactacaccggcaccgaaccggagt
cagccggaattcgacttcgacgacgacgtaaccgtcgatagcaccaacgtcaagccgcag
tcacccttcaaggaaacccctgcgccgcaggaaaagcgcgagccgcagccccggcgcgaa
cggcctgccatcgacacgcaggcagccacacaccagaccgccacggcgtcatcagctttc
gtggacaacgccccaccccagggcgtcacactcactcaggcaatagtggccgctccccct
ccaacccacgaaaccgccgagggaatagcacaactaacaaccgcaatgggcactgctgac
cacgcggcaagcgacgcgtctggcgcccataccgacgcggcatcggcaacgctcatcgtc
gacaagaccacgcctaccatgcgtatggaaagcgcagccgagcagctgcccgcaatcgcg
cccaccaccgcatcagacgctgcgcctacggcgccagtcaagatgatcgagcagcccaaa
gcggcagacacgccagctccagcagccggcgtcgtggcgacgccgatgagaggcgcggat
ccgttcggcatgactgcgccggcaagcgcggcaacgcgtgaaaccgccactaatgcctcg
cagcgtcacgatgaccccgcgcctgtcaagccgacctacgccccagtgcaaacgacgctg
ttagacgtactcaagcccaacacgcatgaaacggtccctaggcacaacgtcggcacgacg
tcgacgccggttgctggtaccacgcctgttgtcgtccagcccagccgcaaaacagaaggc
gaagatgacgaaaacaaggagcagcaggatcgcagctga

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